Populus trichocarpa (black cottonwood): 7475676
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Entry
7475676 CDS
T01077
Name
(RefSeq) oligouridylate-binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7475676
03041 Spliceosome [BR:
pop03041
]
7475676
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
7475676
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
7475676
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
7475676
NCBI-ProteinID:
XP_002304117
UniProt:
B9GVQ6
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All DBs
Position
3:9613627..9619075
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AA seq
421 aa
AA seq
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MQQQRLKQQQQALMQQALLQQQSIYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNI
HTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRAAALAILSLNGRHLFGQPI
KVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRG
FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGAGSNEDKQSSDSKSVVELTIGTS
EDGMEAPNNEAPENNPQYTTVYVGNLSPEVTQPVLHRHFHVLGAGVIEEVRVQRDKGFGF
VRFSTHAEAAVAIQMGNAQSLLCGKQIKCSWGSKPTPPGTSSNPLPPPAAAPLPGISATD
ILAYERQLALSKMGGVHAFMPPHGQLPLKQAAMGMGAGASQAIYDGGFQNVAAAQQLMYY
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagcagaggcttaaacagcaacaacaggcactgatgcaacaagctcttctccaa
cagcagtcaatttaccatcctggtctcctcgctcctcctcagattgagccaattccaagt
ggaaatctgcctcctggttttgatccaagtacttgccgcagtgtgtacgtgggaaacatc
cacactcaggtaactgaacccctcctccaagaggtttttgcgagtactggtcctgttgaa
ggatgcaagcttatcagaaaagaaaagtcatcctatggatttattcactactttgatcgc
cgagcagctgcgcttgctatattatctcttaatggaaggcatctatttggtcagcctatc
aaagttaactgggcatatgctagtggtcagagggaagacacatcaggtcacttcaacatt
tttgttggagatcttagtcctgaggttactgatgcaacattgtatgcctgcttttctgtt
tatcccagttgttcagatgcaagggttatgtgggatcagaagactgggcgttcaagaggg
tttgggtttgtttccttccgaaatcaacaggatgcccagagcgcgataaatgacctaaca
ggaaagtggcttggcagtagacagattcgttgcaactgggcatctaaaggtgctggttcc
aatgaagacaaacaaagttctgattcaaaaagtgtggtggaactaacaattggcacatca
gaggatggcatggaggcaccaaataatgaggctcctgaaaacaatcctcagtataccact
gtttatgtgggcaatctttctccagaggtaactcagcctgttctccaccgccatttccat
gttcttggtgctggagttattgaggaggtccgagtccagagagacaagggttttgggttt
gtgaggttcagtactcatgctgaggcagctgtagctattcagatgggaaatgcccaatca
cttctttgtggtaaacaaataaagtgctcatggggtagcaagcccactccgccagggaca
agctcaaatccactacccccacctgctgctgcccctttgcctgggatctcagctacagat
atcttggcatatgagaggcagctagcattgagcaagatgggtggtgtccatgcctttatg
cctcctcatgggcagcttcctctaaaacaagcagctatgggaatgggtgccggagcaagc
caggcaatatatgatggtggtttccagaatgttgctgctgcccagcaactcatgtactat
cagtaa
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