KEGG   Populus trichocarpa (black cottonwood): 7475679
Entry
7475679           CDS       T01077                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7475679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7475679
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     7475679
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     7475679
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 7475679
NCBI-ProteinID: XP_002304120
UniProt: B9GVZ1
LinkDB
Position
3:9556997..9560398
AA seq 128 aa
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERAIVGDL
YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaggcccggaagatatctacctctctacttctcttgctagctatcttgat
aagaagcttcttgtgcttctacgagatggccgaaagctcatgggaatacttcgttctttt
gaccaatttgccaatgctgttcttgaaggtgcatgtgaaagagctattgttggcgacctt
tattgcgacatccacttgggtctatatgtaattcgtggcgagaatgttgtcttaattggg
gagctggatttggagagggaggaacttccaccacatatgactcgtgtttcagaagcagaa
attaaaagggcacagaaagcagaaagggaggctacagatctcaaaggtacaatgaggaaa
agaatggagttccttgatttggattag

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