Populus trichocarpa (black cottonwood): 7475679
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Entry
7475679 CDS
T01077
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7475679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7475679
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7475679
mRNA degradation factors
5'-3' decay
Lsm complex
7475679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
7475679
NCBI-ProteinID:
XP_002304120
UniProt:
B9GVZ1
LinkDB
All DBs
Position
3:9556997..9560398
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERAIVGDL
YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccggaagatatctacctctctacttctcttgctagctatcttgat
aagaagcttcttgtgcttctacgagatggccgaaagctcatgggaatacttcgttctttt
gaccaatttgccaatgctgttcttgaaggtgcatgtgaaagagctattgttggcgacctt
tattgcgacatccacttgggtctatatgtaattcgtggcgagaatgttgtcttaattggg
gagctggatttggagagggaggaacttccaccacatatgactcgtgtttcagaagcagaa
attaaaagggcacagaaagcagaaagggaggctacagatctcaaaggtacaatgaggaaa
agaatggagttccttgatttggattag
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