Populus trichocarpa (black cottonwood): 7475778
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Entry
7475778 CDS
T01077
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7475778
03015 mRNA surveillance pathway
7475778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7475778
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
7475778
mRNA cycle factors
P-body specific factors
7475778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
7475778
NCBI-ProteinID:
XP_002325958
UniProt:
B9IQD6
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Position
19:complement(11830090..11838086)
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AA seq
527 aa
AA seq
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MKKKKEPLGRTKVVIRHLPPSLSQSNLFSQFDHLFCHRYNWFRFRPGNSSHKSQRYSRAY
IDFKNPEDVLEFAGFFHGHVFVNEKGSQFKAIVEYAPCQHVPKSCPHKDSREGTIYTDPD
YLEFLKLIAKPARNPPSAEIKLERKEAEESEAVKGAPISTPLMEFVRKKRADKGVQGSAV
VKNRKRAGSASLTNSGSSNAKQGSGKKRYILKDSTKNSNWKGKSIIIMARKQEGLPTTSG
RKEISEVESISGVEGSASKISLDAESGRKINLLLDGKKREISLESEGPLHQLGLTSNFGS
SVSTAAKQYQRHEASERLIKSILPSKAASAKKKFQNLEVENDKQPIQPKTTQVGLSGHVP
YKEPLASMSDNDVKSSSYDKLVKKDQHDPGSHFEKQEKREKHTRNKDRPCRGVWTPVRNC
PSKHANAEHLTSSILQSEVHSDSVRETHGEVKDGTQYRDHNQGSAGSPSGSNNSSAENVS
RRDFGRRVTAHNIMLDSSPSATGGKFSKKGGHAGYTAQEKQVWVQKS
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaagaaggaacctttaggaagaaccaaagtagtgataaggcatttgccacct
tctctttctcaatcaaatctcttctctcaattcgatcatcttttctgccatcgttacaat
tggttccgcttccgccccggcaactccagccacaagagtcagaggtattctcgagcttat
attgacttcaagaatccagaagatgttttggagtttgcgggcttctttcatggacatgta
tttgttaatgagaaaggttctcagttcaaggccatagttgagtacgctccttgtcaacat
gttcctaagtcatgccctcataaagattctcgtgaagggactatttacacagatcctgat
tatctggagttcctcaaacttattgccaaacctgcgcggaatcctcctagtgctgaaatt
aagttagaaagaaaagaagcagaggaatctgaggctgtaaaaggagctcctatttctaca
cccttgatggaatttgttcgtaagaaacgagctgataagggtgttcagggttcagctgtt
gttaagaacaggaaaagagctggatcagcatctcttaccaattctggttcaagtaatgcc
aaacaaggctctggcaagaaaaggtatattctcaaggacagcaccaagaattcaaattgg
aagggcaagtcgattatcatcatggcacggaagcaggagggcctacctactacttcaggc
agaaaagaaatatcagaagttgaatccatttctggagttgaaggttctgcttctaaaatt
tctttggatgctgagtctggaaggaaaataaatttgcttcttgatggaaaaaagcgtgaa
atttctcttgaatctgaggggccgttgcatcagttgggcctcacttctaattttggaagt
tcagtttctactgctgctaaacagtatcagaggcatgaagctagtgagaggctgataaaa
agtattctaccttcaaaagctgcctcagccaagaagaaatttcaaaacctagaggtggag
aatgacaagcaaccaattcagcccaaaaccacgcaagtgggtttgagtggtcatgtccct
tacaaggagccactggcatctatgtctgacaatgatgtaaaaagtagttcatatgataag
cttgtgaaaaaggatcaacacgatcctggctctcattttgagaaacaagaaaaacgagaa
aaacatacaagaaataaggatagaccatgtcgtggtgtttggactcctgttcggaactgt
cctagtaaacatgctaatgcagaacacttgacatcctctatattgcaatctgaagtgcat
tctgattctgttcgagaaacccatggagaagtaaaagatggcacgcaatatagggaccat
aatcagggatcagcagggtcaccaagtggaagcaataattcttctgcagagaatgtttcc
cgtagagattttggtcgtcgagtgacagcccataatataatgcttgatagctccccgagt
gcaactggaggaaaattttccaaaaaaggaggtcatgctggctatactgcccaggagaaa
caagtatgggttcagaagtcttaa
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