Populus trichocarpa (black cottonwood): 7476239
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Entry
7476239 CDS
T01077
Name
(RefSeq) coatomer subunit beta-1
KO
K17301
coatomer subunit beta
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7476239
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7476239
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
7476239
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
7476239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT_2
Cnd1
HEAT
Coatomer_g_Cpla
Alpha_adaptinC2
Motif
Other DBs
NCBI-GeneID:
7476239
NCBI-ProteinID:
XP_002324951
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All DBs
Position
18:553497..559105
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AA seq
949 aa
AA seq
DB search
MEKSCTLLVHFDKGTPAIATEIKEALEGSDVSAKIEAMKKAISLLLNGETLPQLFITIVR
YVLPSEDHTVQKLLLLYLEIIDKKDQKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFL
CRLNETEIIEPLIPSVLQNLEHRHPFIRRNAILAVMSIYKLPQGEQLLVDAPEMIEKVLS
TEQDQSAKRNAFLMLFTCDQDRAINYLLTNVDKVSEWGELLQMVVLELIRKVCRTNRGEK
GKYIKIIISLLNAPSNAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLIVL
DRLNELKSSHREIMVDRIMDVLRALSSPNLDIQRKTLDIVLELITPRNINEVVLMLKKEV
MKTQNGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVAIFVR
EIIETNPKLRVSIITRLLDTFYQIRAARVCCCALWIIGEYCLSLSEVESGIATIKQCLGE
LPFYSVSEEGEAPTDASKNSQQPSSVTVSSRRPAILSDGTYATQSAASETAFSPPSIVQG
SLAAGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRGEVNKVSTQALLIMVSMIQL
GQSPVLSHPIDCDSYDRIVLCIRLLCSTGDEVRKIWLQSCRQSFVKMLSEKQLRETEELK
AKAQVSYAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFIKDRDDANKLNRILQ
LTGFSDPVYAEAYVTVHHYDIVLDVTVINRTTETLQNLCLELATMGDLKLVERPQNYTLA
PESSRQIKANIKVSSTETGVIFGNIVYEASNVLERTVVVLNDIHIDIMDYISPAVCTDTA
FRSMWAEFEWENKVAVNTIIQSEKDFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKS
VFGEDALVNVSIEKQLDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtcttgcactcttcttgtgcattttgataaaggaaccccagctatagctaca
gagatcaaagaagcacttgaaggcagtgatgtgtcggcgaagattgaagccatgaagaag
gcaattagtcttctattgaatggggaaaccttaccacagctttttatcaccatagtcaga
tatgtcctgccatcagaagaccacacggtccagaaacttttgcttttgtatctggagatt
attgacaagaaggaccagaagggtagggtgttaccagagatgattctcatttgccaaaac
ctgaggaacaatctgcagcaccccaatgaatacattcgaggggtgacactgaggtttctc
tgtcgattgaatgagacagaaataattgaaccgcttatcccctcagtcctccagaatctt
gaacaccggcatccgttcattaggaggaatgctatcttagctgtgatgtccatttataag
cttcctcagggtgagcagcttttggttgatgctcctgaaatgattgagaaggttctatca
acagagcaggatcaatcagcaaagaggaatgcatttctcatgctatttacttgtgatcaa
gatcgggccattaattacctcttgaccaatgttgataaggtctctgaatggggtgaactg
ctgcagatggttgtcctagagttgattcggaaggtgtgcagaacgaatcggggagagaag
ggaaaatacattaagatcattatatcattgctgaatgccccttctaatgcggttatttac
gagtgtgctgggacacttgtttctctgtcatctgcacctactgctatcagagctgctgcc
aacacctattgccagcttcttctctctcagagtgacaacaacgtgaagcttattgttctt
gatcgtctgaatgagctcaagtcttctcatagagagatcatggttgacaggataatggat
gtgcttagggcactatccagcccgaatcttgacattcagagaaagactctagatattgtc
cttgagttgatcaccccgaggaacatcaacgaggttgttctcatgttgaagaaggaagtt
atgaagactcaaaatggagagcttgagaagaatggcgagtacaggcagatgctcatccaa
gccatccattcttgtgccatcaagttcccagaggtggcgagtacagtggttcacctgttg
atggatttcctgggtgacagtaatgttgcttcagccattgatgtggcaatatttgtacgg
gagataattgagacaaatccgaaactgagggtttcaattataacaagactgttagacact
ttctaccagatacgagctgcaagggtttgctgctgtgctctctggattattggcgagtat
tgcctatccctctctgaagttgaaagtggtattgcaactatcaagcaatgcctgggagag
ctaccattttattcagtttcagaagaaggggaagcacccactgatgcttctaagaactct
caacaaccaagttctgttactgtttcttctagaagacctgccattctttctgatgggact
tatgcaacacagagtgctgcttctgaaactgccttttcgcctccaagcattgttcagggt
tcattagctgctgggaacttgagatcccttcttctgactggtgattttttcctcggagca
gttgtggcgtgcactttgacaaagcttgttctgagattggaagaggtgcagccttctagg
ggtgaagtaaacaaagtatccacacaggcattgttgatcatggtctctatgatacaactt
gggcaatcaccagtcctgtcacacccaattgactgtgactcttatgataggattgtcctt
tgcataagattactatgcagtacaggtgacgaggtcaggaagatatggctgcagtcttgc
cgtcagagttttgtcaaaatgctttcagagaaacagttgagggaaactgaggaactaaag
gcaaaggctcaggtttcttatgcacagccagatgacctcattgatttctaccatttgaag
agcagaaagggtatgagtcagctggagttggaagatgaagttcaagatgatttgaagcga
gcaactggggagttcatcaaggacagggatgatgcgaataagcttaatcgcatccttcag
ctcacaggatttagtgaccctgtttatgctgaagcttatgtgacagttcatcactatgac
attgtgcttgatgtcacagtgatcaacaggacaacagaaactctccagaatttgtgcttg
gaacttgccacaatgggtgatctgaaactggtggagcggccccagaactacaccctagct
cccgagtctagtaggcagataaaggccaacatcaaggtgtcctcaacagagacaggagtg
atttttggcaatattgtgtatgaggcatccaatgtacttgagcggacagttgttgtcctt
aatgacatccatattgatatcatggattacatctctcctgcggtttgcacagatacagct
ttcaggtcaatgtgggcggagtttgaatgggaaaacaaggtcgctgtgaacacaataatc
caaagcgagaaggattttctggaccacatcatcaagtctaccaatatgaagtgtctcacc
gcaccgtccgcactggatggtgactgcggtttcctggctgcaaatttgtacgccaagagt
gttttcggtgaggacgcacttgttaacgtgagcatcgagaagcaattggatgggaagctt
agtgggtacatccgtataaggagcaagacccagggaatagccctcagcttaggggataag
atcactctcaagcagaagggaggcagttga
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