Populus trichocarpa (black cottonwood): 7476388
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Entry
7476388 CDS
T01077
Name
(RefSeq) transcription factor SPATULA isoform X1
KO
K28361
transcription factor SPT/ALC
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7476388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7476388
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
7476388
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Ribosomal_S20p
Motif
Other DBs
NCBI-GeneID:
7476388
NCBI-ProteinID:
XP_024457159
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Position
5:11030499..11035640
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AA seq
391 aa
AA seq
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MGDVYNNETNNINNTCSASSSSRHYHRSSDDISLFLHQILPRSPSSTSSSSFIGPQTLQP
FSVPAPFDDPLRSGVILGVDSSGGGGGALWSGNVRTRLIMSENETDHECDCESEEGLEAL
IDEMSVKPAPPRSSKRTRAAEVHNLSEKRRRSRINEKMKALQNLIPNSSKTDKASMLDEA
IEYLKLLQLQVQMLSMRNGTSLHPMFLPDVLQPSQLSQVRMGFDEEIGSKHMNMTTSVPL
DGEARLQTMLTLPDHCTSSNQASNPIHAETSSGFQSTIQAHFSPFPLRVSSEETWRKDIL
PGQQLNVSHAERNPSEFELAAAVTTSLPFGIQACDLKDSISLEACVIGRDQNEGVCLENM
EHNLILSQDLNSTRTGRGAGNHEIEIEKLDI
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgggagatgtctacaataacgaaaccaacaacattaataacacctgctcagcttcctct
tcttctcgtcattaccaccgttcatcagacgatatctcacttttcctccatcaaattctt
ccccgttcaccttcatcaacgtcttcttcctcatttataggcccacagacgctgcagcca
ttttcagtgccagccccctttgatgatcctcttcgatcgggagtgatcttaggtgtggat
tcgagtggtggaggtggtggtgctctttggtctgggaatgtgagaacgagactgatcatg
agtgagaacgagactgatcatgagtgtgattgtgaaagcgaggagggtttggaagcttta
atagatgagatgtcagtaaagccagctcctccacgaagctcaaagagaacaagagctgca
gaagttcataatttgtctgagaagaggaggaggagcaggattaatgagaaaatgaaggca
ctgcaaaatttgattccaaattccagcaagacagataaggcttcaatgctggatgaagct
attgagtatctcaagctgctccagctccaagtacagatgctatcaatgagaaatggaaca
agtttgcatccaatgtttttacctgatgtactgcagccatcacaactctctcaggtgaga
atgggattcgatgaagaaattggatctaagcatatgaatatgacaacctccgttcctttg
gatggagaagctcggctacagaccatgctcactcttccagaccattgcacttcttcaaac
caggcatcaaatccaatacatgctgaaacctcatctggtttccaatcaactatccaggct
catttcagcccctttccacttcgtgtctcttctgaggaaacttggaggaaagacatttta
ccaggtcagcaattgaatgtaagtcatgctgaaaggaacccatcagaatttgagttggca
gccgcagttacaacttcacttccctttgggatacaagcatgtgacttgaaggacagtatc
tctctagaagcttgcgtgataggaagagaccagaatgaaggcgtgtgcttggagaatatg
gagcacaatcttatactttctcaagatctgaatagcactcgaacaggaagaggcgcgggc
aatcatgaaatagagatagaaaaactagatatttga
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