Populus trichocarpa (black cottonwood): 7476448
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Entry
7476448 CDS
T01077
Name
(RefSeq) rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
7476448
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
7476448
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
7476448
NCBI-ProteinID:
XP_002306520
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Position
5:12905252..12912172
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AA seq
697 aa
AA seq
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MWKRLHSFAGSLRDFGGCTRHNNGASSSCQNPGGGDLDRGQRASRVNKGGPTMPFQAVRL
YIQDHHVVMDNGIVQVTLSKPAGIVTGIRYDGIDNLLEVLNRETNRGYWDLHWNPPGGNG
IFDVISGTSFRVVVENDEQVELSFTRMWDSSLEGKYIPLNIDKRFILLRGSSGFYSYAIY
EHLQEWPGFDIGETRITFKLRKDKFQYMAIADNRQRLMPLPDDRLPGRCQALAYPEAVIL
VNPKLPELTGEVDDKYQYSCENKDNQVHGWICFKPPVGFWQITPSDEFRTAGPLKQNLTS
HVGPTTLAMFHSSHYAGKDLVLSISPGEPWKKVFGPVFIYLNSASNGEDPLFLWEDAKMQ
MMAEVQSWPYSFPASEDFQKSEQRGNVCGRLLVKDRNISDDYILASGAYVGLAPPGDVGS
WQTECKDYQFWTRADENGYFSIKNIRTGDYNLYAWVPGFLGDYRWDAIVNIISGCDMDMG
DLVYEPPRDGPTLWEIGIPDRSAAEFYIPGPDPKFMNNLYANHPDRFRQYGLWGRYADLY
PDTDLVYTVGLSDYRKDWFFAQVVRRKDDDTQVGTTWQIKFKLDKVDRNSSYKLRVAIAS
ATLAELQVRVNDAKAQRPLFTSGLIGRDNAIARHGIHGLYRLYNVNIPGARLVEGENTIF
LTQPRCTSPFQGLMYDYIRLEGPPFSGSSNEASSSFK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaagattgcacagttttgctggctctctccgtgactttggcggatgcacgcgt
cacaacaacggcgcttcctcctcttgtcaaaatcctggaggtggagatttggatcgtggt
caaagagcttcaagagttaacaagggtggtcccaccatgccatttcaggcagtgcgattg
tatattcaagatcaccatgtggtgatggataatggcatagtacaagttaccttatcgaaa
ccagctggaattgtcaccgggatacgatatgatggcatcgacaatttgcttgaagttctc
aatcgtgaaacaaatagagggtactgggatcttcactggaatccacctggaggcaacgga
atatttgatgtgattagtggaacaagttttagggtcgtagtggaaaatgacgagcaggtt
gagctctcatttacaagaatgtgggattcctcacttgaaggcaaatacattcccttgaat
atagataaaaggtttatattgctacgtggttcctcaggcttctactcatatgccatttac
gagcacttgcaggaatggcctggttttgatattggcgaaacaaggattacttttaaactc
cggaaagacaagtttcagtacatggccatagcagataacaggcaaagattgatgccctta
ccagatgaccgcttgccaggaagatgtcaagccctggcttatccagaagctgtcattctt
gttaatcccaaactgccagagctcacaggagaggtggatgacaagtaccaatattcatgt
gaaaacaaagataatcaagtccatgggtggatatgcttcaagcctccagtggggttctgg
caaatcacaccaagtgatgaattccgaactgctgggcccctgaaacagaatctcacttct
catgttggccccaccactcttgctatgtttcatagttcacattatgcgggaaaagatctg
gtactgagtataagccctggtgaaccatggaagaaagtttttggccctgtttttatctat
cttaattctgcatcaaatggagaggaccctctctttctgtgggaagatgctaaaatgcag
atgatggctgaagtccaaagctggccatacagcttccctgcttctgaggatttccaaaag
tcagaacaacgagggaatgtttgtggaagactactagtcaaagacaggaatataagtgat
gactatatactagcaagtggtgcttatgtggggttggccccaccaggagatgttggatca
tggcaaacagaatgcaaggactaccaattctggaccagagcagatgagaatggctatttc
tctattaaaaacatacgcaccggggactacaatctttatgcatgggtccctggatttctt
ggagactacagatgggatgctatcgtgaacataatttctggttgtgatatggatatgggt
gatcttgtgtacgagcctccaagagatgggcccacactgtgggaaataggcatccctgac
cgttccgccgctgagttctatattccaggtcctgatccaaagtttatgaataatctatat
gccaatcatcctgacagatttcggcaatatggtttgtggggcagatatgcagatctgtac
cctgatacagatttggtttacacagtcggtctcagtgactacagaaaagactggttcttt
gctcaggttgtcaggagaaaagacgatgatacacaagtaggaactacatggcaaatcaag
ttcaaacttgacaaagtggatcggaacagtagctacaaactgagagtggcaattgcatct
gcaaccctagcagaattgcaggttcgtgttaatgatgcaaaagcacaacgtccactattt
acaagcggattgatagggagggacaacgcaattgctagacatgggattcatgggctctac
cggctgtataatgtgaatattccaggagctcggctagtcgaaggagagaataccatcttc
ttgacgcagccaagatgcaccagccctttccagggtctcatgtatgactacatacgtcta
gaaggtcctcctttttctggatccagtaatgaagcttccagttcatttaagtaa
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