Populus trichocarpa (black cottonwood): 7476928
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Entry
7476928 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
7476928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7476928
03400 DNA repair and recombination proteins [BR:
pop03400
]
7476928
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
7476928
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
7476928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
7476928
NCBI-ProteinID:
XP_024456849
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Position
5:complement(22711818..22717716)
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AA seq
1222 aa
AA seq
DB search
MKVDEDSVLLSSLGVTSANPEDIERVVLEEARNNADKGGSTEEEPPDKLENVDPSSANQA
KLYSKLRAVKFEIDAVASTVEEVTDVVSGEHQTYDDGGGTKKRDKGDDESGVQVSPDDFT
LQQALAADRLRSLKRTKVKLEKELLDLRKDDATKAVEHDKLLANLVKEDPRPKKKSKKVL
KSGKNKEKQQKTVSFADDADFDLMLDGASSGFVETERDELVRKGILTPFHQLKGFERRLQ
QPGSSSGKNESIEEDKTDGLDSDSVVRAAHSMLEAAKARPTTKLLDSEALPKLDAPTRPF
QRLKTPLKACQSPERDAEKRKGSERKRKRPLPGKKWRKSASWEDMGESEDSGRNLVTSIS
EEDVDDGYDNDSPFITLEGGLKIPEAIFSELFDYQKVGVQWLWELHCQRAGGIIGDEMGL
GKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPRFHVELLHDSAQDVSCR
DPLKKKRAQSYESDCETEDSLDSDYEGSISCRKANKWDSLINRVFESDSGLLITTYEQLR
LLGEKLLDFEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLF
DFVFPGKLGVMPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKMD
VNAHLPKKTEHVLFCSLTSEQRSVYRAFLASTEVENILDGSRNSLYGIDVMRKICNHPDL
LEREHSYHNPDYGNPERSGKMKVVAQVLKVWQEQGHRVLLFTQTQQMLDIFENFLNSGGY
NYRRMDGSTPIKLRMSIIDEFNNSGDIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPST
DMQARERAWRIGQKKDVTVYRLITGGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFRARD
MKDLFTLNDDGEGGSTETSNIFSQLSEDVNVVGTKKEKLKKRKKNKGIAQHADDAIVDNE
NNSEIRALRREEKEKADCSDGEVDEETNILKSLFDANGIHSAVNHDVIMNAHDGEKMRLE
EQASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAPSSVRQKFGSTVNSQLIKSS
DSSSAIKSNLKGIAAGTSAGKALSSAELLARIRGNQERAVGAGLDQQFGFASSSGTSAMS
ENSGASKPPQTLSSVQPEILIRQICTFIQRRGGSSDSSSIVQHFKDRIPSKDLPLFKNLL
KEIASLREDANGKQWVLKPEYQ
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtagatgaggattcagttttgcttagtagcttgggggtcacctcagcgaaccct
gaagatattgaacgtgttgttttagaagaggcaagaaacaatgcagataagggagggagc
actgaggaggaacctcctgacaagttggaaaacgttgatccatcatctgccaaccaagca
aaactttatagtaaattgagggctgtaaaatttgaaatagatgctgttgcatcaactgtt
gaagaagtaacagatgttgtgagtggcgaacaccagacttatgatgatggtggtggaaca
aagaaaagggacaaaggagatgatgaaagtggagttcaggtatctcctgatgacttcact
cttcaacaggccctggcagctgatcggctaagaagtcttaagagaactaaagtaaaactt
gagaaagagcttttagatttgcgcaaggatgatgctaccaaggctgtagaacatgataaa
ctgttagcaaaccttgtgaaggaagatccaagaccgaagaaaaagtcaaaaaaggttctg
aaatcaggaaaaaacaaggaaaagcaacagaaaacagtttcattcgctgatgatgctgat
tttgatttgatgttggatggagcatcttcaggatttgttgaaacagaaagggatgaattg
gtgaggaaaggaatattaactccttttcatcagcttaagggctttgaacgtcgtcttcag
caaccagggtcatcaagtgggaaaaatgagtctattgaagaagacaagactgatggtctt
gattccgatagtgttgtcagagctgctcattcgatgttagaggctgcaaaagctcgtccc
acaactaaacttcttgattcagaagctctgccaaagcttgatgcaccaactcgtcctttt
cagaggctgaaaacacctttgaaagcttgtcagtccccagaaagagatgcagagaaaagg
aagggttcagaaaggaaaaggaaacggcctttgcctggaaagaaatggagaaagagtgct
tcttgggaagatatgggtgaaagtgaagattctgggagaaacttggttacatccatctcc
gaagaagacgttgatgatggttatgataatgactctcctttcataacacttgaaggtggt
cttaaaatcccagaagccattttcagcgaactctttgattaccagaaagttggtgtgcag
tggctatgggaattgcattgccaaagagcaggcggtattattggagatgagatgggtctt
ggtaagaccatccaggtcttatcttttcttggagcattgcatttcagtaacatgtacaaa
ccaagtattgttgtttgccctgtcacactcttgagacaatggaaaagggaagcacaaaag
tggtacccaagatttcatgtggagctactacatgattctgctcaggatgtttcttgcagg
gatcctttaaagaagaagcgagcccagtcttatgaaagcgactgtgagactgaagattca
cttgacagtgattatgagggaagtatttcatgtagaaaggccaacaaatgggattccttg
ataaatagagtttttgaatctgattctgggttgcttattaccacttatgaacaactacgc
ttgctaggagaaaaattactcgactttgaatggggctatgcagttctggatgaagggcac
cgtattcggaatccaaatgctgaaattaccctggtttgcaaacagcttcagacggttcat
cgcattataatgacaggcgcaccgattcaaaacaaattgactgaattgtggtctttgttt
gattttgtatttcctggaaagttgggggtcatgcccgtatttgaggcagaatttgctgtt
ccaatctctgttggtggttatgccaatgcttcacctctacaagtatctacagcttacagg
tgtgctgtggtgctgcgtgacttgatcatgccttatcttctccggcgtatgaagatggat
gtcaatgcacatcttcccaaaaaaactgaacatgtcctcttctgtagtcttacttcagag
caaagatctgtgtatagagcgtttcttgcaagcactgaggtggaaaatatactggatgga
agtagaaattctctgtatggaatagatgtgatgcgtaagatatgtaaccatcctgatctg
cttgagagagagcattcctatcataatccagactatgggaatcctgaacgcagtggaaaa
atgaaagttgtagcccaagtgctcaaggtgtggcaggagcagggtcaccgtgttcttctg
ttcactcaaactcagcaaatgctggatatttttgagaattttttgaattctggtggttat
aattaccgaagaatggacggttcaactcctataaaactgaggatgtccataatagatgaa
tttaacaactcaggtgatatttttatattcattttaactacaaaagttggaggattaggg
acaaatctaactggtgcaaacagggtgattatctttgatcctgattggaacccctcaact
gacatgcaggccagggaacgtgcttggcgtattggccagaaaaaggatgtcactgtatat
agactgatcacaggtggaactattgaggagaaggtatatcaccggcaaatttataagcat
tttcttactaataagatattgaagaacccacagcagagaaggttctttagagctcgagat
atgaaggatcttttcacgctgaatgatgatggagagggtgggtcaactgaaacatctaac
attttcagtcagttatctgaagatgtgaatgttgttggtacaaagaaagaaaagctgaag
aagcgcaaaaaaaacaaaggcattgcacaacatgctgacgatgccatagttgacaatgaa
aacaactctgagatcagagctttgaggagggaagagaaagaaaaagctgattgtagtgat
ggtgaagtagatgaagaaacaaatatcttgaagagtctttttgatgccaatgggatacat
agtgccgtgaaccatgatgttattatgaatgcacatgatggagagaagatgaggcttgag
gaacaagcttctcaagttgcacaaagagcagcagaagcattacgccagtctcgaatgctc
cgtagtcgtgatagtatatctgtccctacatggacaggcaaatcagggactgctggtgca
ccatcatcagttcgtcaaaaatttggatcaactgtgaactcccagctgatcaaatcttct
gattcatcatccgcaataaaaagcaacctgaaaggcatagcagctgggacttctgcagga
aaagcattatcctcggcggaactacttgccagaattcggggaaatcaagaaagagcagtt
ggtgccgggcttgaccaacagtttggatttgcatcaagttctggtaccagtgcaatgtct
gaaaatagtggagcatctaagccacctcaaactttatccagtgtccagcctgaaattttg
attcgccagatctgtacatttatacaaagacgaggtggaagttctgattcatcaagcata
gtccagcacttcaaagacaggataccatcgaaggacctgcccttgttcaagaatcttttg
aaggaaatagcttcactgagggaagacgctaatggaaaacaatgggttcttaaacccgaa
tatcaatag
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integrated database retrieval system
