Populus trichocarpa (black cottonwood): 7477106
Help
Entry
7477106 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7477106
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7477106
09122 Translation
03013 Nucleocytoplasmic transport
7477106
03015 mRNA surveillance pathway
7477106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7477106
03041 Spliceosome [BR:
pop03041
]
7477106
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7477106
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7477106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
YabA
SAP_new25
Motif
Other DBs
NCBI-GeneID:
7477106
NCBI-ProteinID:
XP_024457229
LinkDB
All DBs
Position
5:5479192..5484183
Genome browser
AA seq
773 aa
AA seq
DB search
MSSQYSVLGNKLDLVQWKVTELKEELRRRKLKTSGLKDDLIKRLEEAIRIEREDEEIRHE
LVNAAEVAEDVDNGVDLENPHVVGVKNSEAVSAVTETVEVVVDDAANRNEKVDDVMVQVG
IDESVKAMGPRELQEEVKMGGVNSSRVEEEELTVHATTVETSISVTESVVSEVALSVQDV
QNSGTQEANENSSIQLENEDSKPQLENESSKPPDENVVLESSAPDNQVSEVNPNLGFQVK
SDSISTDSVSINEKIELKDNIIADDVKLELDDVKLEMVEPSSSNVVPVGGESHPMDVEEP
QEKSPSVEKKDDSNGTNADMSKKNYSVDVGCSEKLNLDRSSGDDSMEEDVLESKQIDSKY
NTDEVGDKCKIKNELPSLKEENLVNVTGKDLSTDQKEIHVENMTCPVAPMEKRKLNDQEA
VGNTEPLKRQRRWNSESIKVPEQQSSNLTPTTTPNDGFQPTPLRRNFSRSDSSVSEEAPK
ERIVPPSQKPPTNSLRIDRFLRPFTLKAVQELLGKTGSVTSFWMDHIKTHCYVMYSSVEE
AVETRNTVYNLQWPPNGGRLLVAEFVDPQEVKIRVDAPPQSPAAPVTPSTPAPAPPMLQP
QPSPRQQVSRQQLPPPPSLPLPPPLSNPPHARERVDLPPPPPLPEKHDPPIVTLDDLFRK
TKTAPRIYYLPLSEEQVAAKLAGHGKNTKQSAGVACGKELFQPSRGMWFVAGFGFSEDCM
MLKKLKFFLALETCQLRALYMSGSPNMWTYLVFLLNKNFNFPNLKQLVLNSLH
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcacaatactcagttcttggaaataaactggacttagtccagtggaaggttact
gagttaaaagaagagcttagaaggcggaaattgaaaaccagtggtttgaaggatgatttg
attaaacggttggaagaagctattcgtattgagagggaagacgaagaaattcgccatgag
ttggtaaatgctgcagaggttgcggaggatgtggataatggtgttgatttggagaacccg
catgtagttggggtgaaaaattcagaggcagtatcagctgttactgagacggttgaagtt
gttgtggatgatgctgctaacagaaatgagaaggtggatgatgttatggttcaggttggc
attgatgagagtgtgaaagccatgggtccaagagaacttcaagaggaggtcaaaatgggt
ggtgttaattcttctagggtagaagaagaggagctcactgttcatgcaactaccgtggag
accagcatttctgttactgagagtgtggtatctgaagtagcattgagtgtgcaagatgtg
caaaattctggaacacaggaggcaaatgagaactcaagtatccagctggagaatgaagat
tcaaagccccagctggagaatgagagttcaaagcctccagacgagaatgtcgtgcttgag
tcttctgctccggacaaccaggtatctgaggtcaaccctaatttagggtttcaagtaaaa
tctgattctatttctactgattctgtatcaattaatgaaaagattgaactaaaggataat
ataattgctgatgatgtcaaattagaactagatgatgttaagctagagatggtggaacca
tcatccagtaatgttgtcccagttggtggtgaatcacatccaatggatgttgaagagcca
caagaaaagagtccctctgttgaaaagaaagatgacagcaatggtacaaatgcagatatg
agcaagaaaaattacagtgttgatgtggggtgctcggagaagttgaatttagacaggagt
tctggtgatgactccatggaggaagatgttctagagagtaagcaaattgattcaaagtat
aatactgatgaagtgggcgataagtgtaaaataaaaaatgaactgcccagtctgaaggag
gaaaatctagttaatgttactgggaaggatttatctactgatcaaaaggagatccatgtt
gagaatatgacttgtccagttgctcccatggaaaaaagaaagcttaatgatcaagaagct
gttggaaacacagaacctttaaagcggcaacgaagatggaattctgagagcatcaaggtt
cctgaacagcaaagctctaatcttacacccaccaccacaccaaatgatgggtttcaacca
actcctttgcgacgcaacttttctcgatctgactcatctgttagtgaggaggcacccaag
gagcgcattgttccaccatcacaaaaacctcctaccaattctctcagaatcgatcgtttt
ctgcgtccttttactctgaaagctgtccaagaactcctgggaaaaactgggagtgtcacc
agtttttggatggatcatatcaaaacccattgctatgttatgtattcgtctgtggaagaa
gctgtggagacacgaaatactgtttataacctccaatggccaccaaatggtggacgtctt
ttagtggccgagtttgttgatcctcaggaagttaaaatccgggtggatgctcctcctcag
tctccagctgcacctgtcactcctagtacgcctgcacctgccccacccatgttgcagcca
cagccctctccccgtcaacaggtttctaggcagcagcttccacctccaccttcccttcca
cttccaccgccgctgtctaacccaccccatgccagggaacgggtcgatcttcctccaccc
cctccacttcctgagaaacatgatcctccaattgtcaccctggatgacctctttcggaaa
accaaaacagctcctcggatctactatttaccattatcagaagagcaagtcgcagcaaaa
cttgcaggacatggcaaaaacaccaagcagtctgcaggtgttgcttgtgggaaggaattg
ttccagccaagcagaggaatgtggttcgttgctggatttggtttttctgaagactgcatg
atgttgaagaagcttaagttttttttagcattagaaacttgtcaactaagagctctctat
atgagtggatcgcccaacatgtggacatatcttgttttcctgttgaacaagaattttaac
tttcccaatcttaaacagttggttctaaattccttgcattga
DBGET
integrated database retrieval system
