KEGG   Populus trichocarpa (black cottonwood): 7477121
Entry
7477121           CDS       T01077                                 
Name
(RefSeq) lysine-specific demethylase JMJ25 isoform X1
  KO
K15601  [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7477121
Enzymes [BR:pop01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.65  [histone H3]-dimethyl-L-lysine9 demethylase
     7477121
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    7477121
SSDB
Motif
Pfam: JmjC Cupin_2 JmjC_2
Other DBs
NCBI-GeneID: 7477121
NCBI-ProteinID: XP_024456497
LinkDB
Position
5:5658683..5669635
AA seq 1252 aa
MTRVGKRQRPAKSTAGVKEEAAENGGSEEEVKESGGLVEGSEIEGKVEETCHFDKSKDVS
NKGNREWKVKESESRVSEEEREGNGVEEGRECDLKENANKGKKKKKGKKKESDNEKEKEK
VKEGNDEKGVSSVVKEKKRVKFAEKEVASVEEGEFGDKSEVRFVKQEERGFAWKEKQEAG
TEEEEEIAVDNGKEGKLDGKREEKGKRKREKKGGKLRNQEVDDEEGKEIGELGVEGKEKV
KFVENEGENSEKGEKKGAELGNEEETVVGVEENGGPLKKRPRKNEKKVNYAEIDSALDEV
VFGEKHRKSQKEDGVSDSRKKKALLENDGLQREKKSENGDVNNEEKGTALGNEEVESEEG
KETVVGVEENGGPLKKRLRKTEKKVNYAEIDNALDELVFGEKHRKSRKKVGVSESRQKKG
VSECDGLESEKKRENGDVNSGTKRASQKGKKKQEAQEKIKGEEEMEESGEGKGEGDSLVI
CTGTGHGPRSQKEQAGQNSKSWRTSQFTEEACLMCHQCQRSDKGRVIRCLKCKRKRYCIP
CLTKWYPKMTEDDIASACPVCLGNCNCKSCLRLDAPVKDLKNLNLEVSEEEEVQHSKFLL
CSLLPFLKRLDAEQMTEREIEARIRGVPPADLQIENASCPADERMFCDNCRTSIFDYHRS
CSNCSSDLCLLCCREIRAGCLQGGGPDVVMEYIDRGFKYMHGEHEEIKDELLTGSPKKTV
SEDFIGPKSGWKANEDGSIHCACGSGNLQLKCLFPNTEVNFSVSVSVSELVKKVEDVLKN
CEIDSANAPVELRMCFNSNGNRDICNGNELLKAACREDSDDNYLFNPKAKDIMEDDLKHF
QFHWKRAEPVIVSNVLETASGLSWEPMVMWRAFRQIKHEKHGTLLDVKAIECLSCCEVEI
NVHKFFTGYTEGRFDGKNWPQILKLKDWPPYKTFGESLPRHDVEFTCCLPFKEYTDRRSG
PLNLAIRLPQNSLKPDMGPKTYIAYGFPIELGRGDSVTKLHCDMSDAVNVLTHTAEVSYN
DGQLAEIQNLKLLHFKQDQRELFGYDQNVDKFDVNKNGGVSGKSTEKEEVVQGKIYESGP
LNCANELEWPDALDGGAVWDIFRREDVPKLQEYLDKHFKEFRHIHCCPLQKVVHSIHDQT
FYLTLEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVG
ECIRLTEEFRLLPPNHQAKEDKLEIKKMLLHAARRAVDFLMKDGKVEKTEKV
NT seq 3759 nt   +upstreamnt  +downstreamnt
atgacaagagtcgggaagcggcagagaccggcgaaatcgacggcgggggtgaaggaggaa
gctgcggagaatggtgggtctgaggaggaagtgaaggaaagtgggggtttagttgaaggt
agtgaaattgaagggaaagtggaggaaacttgtcatttcgataagtcaaaggatgtctca
aataaggggaatagggagtggaaggtaaaggagagtgagagtagagttagtgaagaagaa
agggaaggtaatggtgtggaggaagggcgagaatgtgatctgaaggagaatgcgaataag
ggtaaaaagaaaaagaagggaaagaagaaagaaagtgataatgagaaggagaaggagaag
gtgaaagaagggaatgatgaaaagggggtctcatctgttgtgaaagagaagaaaagggtg
aaatttgctgagaaagaggtggcgagtgtggaagaaggcgaatttggtgataaaagtgaa
gtgcggtttgtgaagcaggaagagagagggtttgcttggaaggaaaaacaggaggctggt
actgaggaagaagaagagatagccgtagataatggaaaagaaggtaaattagatgggaaa
agggaagagaaagggaaaaggaagagggagaagaagggaggtaaattgaggaatcaggag
gtggatgatgaggaagggaaagagattggagagctgggagttgaagggaaggaaaaagtg
aaatttgttgagaatgaaggagagaacagtgaaaagggtgagaagaagggagctgaatta
ggtaatgaggaggagactgttgtcggcgtggaagagaatggaggtccattaaagaagagg
ccgaggaaaaatgagaaaaaggtgaattatgctgagattgatagtgcattagatgaggta
gtgtttggggagaaacataggaagagccagaaggaggatggagtctcggatagtagaaag
aagaaagcactcttggagaatgatgggctgcaacgtgagaaaaagagtgaaaatggtgat
gtaaacaacgaggagaagggaactgcattgggtaatgaggaggtggagagtgaggagggg
aaggagactgttgttggtgtggaagagaatggaggtcccttaaagaagaggctgaggaaa
actgagaaaaaggtgaattatgctgagattgataatgcattagacgagttagtgtttggg
gagaagcataggaagagcaggaagaaggtgggagtctcggagagtagacagaagaaaggg
gtctcggagtgtgatggattggaaagtgagaaaaagagggaaaacggtgatgtgaatagt
gggacaaagagagcgagtcaaaaagggaagaagaagcaggaggcgcaggagaaaattaaa
ggagaagaagaaatggaagaaagtggtgaaggcaaaggtgaaggagattctttggtgatt
tgcactgggacaggtcatgggcccaggagtcagaaagagcaagctgggcagaacagcaaa
tcctggcgcactagtcagttcactgaggaagcgtgtttaatgtgccaccaatgccagaga
agtgataaaggccgtgtcattcgatgcctgaaatgtaaaaggaagcgctattgtatcccc
tgcttaacaaaatggtatcctaagatgacagaggatgatattgcaagtgcttgtccagtt
tgtcttggaaattgcaactgtaaatcttgtttgcgtctagatgcgccagtaaaagacctg
aaaaatttaaacctggaagtaagcgaagaagaagaagtgcagcactctaagtttttactt
tgttcacttcttccatttctgaagcggttagatgcagagcaaatgacggagagagaaatt
gaggctaggataaggggtgtaccgcctgcagacttacagatagaaaatgctagctgccct
gcagatgaacgcatgttctgtgataattgccgaacttctatttttgattatcacagaagt
tgctcaaattgctcttctgatctttgtcttctctgttgccgtgagatccgtgctggatgc
ttgcaaggtggtgggccggatgtggttatggagtatattgataggggatttaagtatatg
catggtgaacatgaggaaataaaagatgaattgctgactggttcgcctaaaaagactgtc
tctgaggattttatagggccaaagtctggatggaaagcaaatgaagatggaagcattcat
tgtgcttgtggtagtggcaatttacaactgaaatgtttgttcccaaacacagaagttaat
ttttcagtttcagtttcagtttcagagttggtaaagaaagttgaagatgtgttaaaaaac
tgtgaaattgactctgctaatgctcccgttgaactacgcatgtgttttaattcgaatggc
aatcgtgatatctgtaatggtaacgagttgttaaaagcagcatgtcgagaagattctgat
gataactatttgttcaatccaaaagccaaagatatcatggaggatgatttgaaacatttt
cagttccattggaagagagctgagcctgtgattgttagcaatgtgcttgagactgcttct
gggttaagttgggagccgatggtaatgtggcgtgccttccgccagatcaaacatgaaaaa
catggtacacttttggatgttaaggcaattgagtgcctgagttgctgtgaggtagaaatt
aatgtccataaattctttactggttacacggagggaaggtttgatggtaaaaattggcct
cagattctgaagctgaaagactggcccccatataaaacatttggtgaaagtttgccacga
catgatgttgaattcacctgttgtttgcccttcaaggagtatactgaccgccgcagtgga
cctttaaaccttgctatcaggttgcctcagaattctttgaagccagacatggggccgaag
acatatattgcttatggatttcctatagagcttgggcgtggagattctgttaccaagctt
cattgtgacatgtctgatgcggtgaatgttttaacgcatactgctgaggtatcctataac
gatggacaacttgctgagattcaaaatttgaagcttcttcacttcaaacaagaccagaga
gaactttttggatatgatcagaatgtggataaatttgatgttaacaagaatggtggtgtt
tctgggaaatctactgagaaggaagaagtggttcaaggcaaaatctatgagagtggacct
ttaaattgtgcaaatgagttggaatggcctgacgctttagatggaggtgctgtttgggat
attttccggagagaagatgttcctaaattgcaggaatatctcgataagcacttcaaagaa
tttaggcatatccattgttgccctttacaaaaggttgttcactccatacatgaccagaca
ttttatttgactctagagcacaaaaggaagctaaaagaggaatatggcattgaaccgtgg
acatttgtccagaaacttggagatgctgtctttattcctgcaggctgtcctcatcaagtt
agaaacttgaagtcttgcattaaggtagcactggactttgtctcgcctgaaaatgttggt
gagtgcatacgtttgacagaggaattccgtctgctccccccaaatcatcaggccaaggaa
gacaagctggagataaagaaaatgttacttcatgctgcgagacgcgctgtagattttctg
atgaaggatggaaaagtggagaaaaccgagaaggtttga

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