Populus trichocarpa (black cottonwood): 7477198
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Entry
7477198 CDS
T01077
Name
(RefSeq) novel plant SNARE 13
KO
K08494
novel plant SNARE
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7477198
Membrane trafficking [BR:
pop04131
]
SNARE
SNAP-25[N] (Qb)
NPSN
7477198
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sec20
V-SNARE_C
MCPsignal
Helo_like_N
Prominin
TMPIT
GCIP_C
GxGYxYP_C
IL11
MscS_porin
YkyA
Motif
Other DBs
NCBI-GeneID:
7477198
NCBI-ProteinID:
XP_002314329
UniProt:
B9HXA1
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All DBs
Position
10:206845..211700
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AA seq
260 aa
AA seq
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MASELQMSPQLEQIHGEIKDNFRALSNGFQRLNNIKDSNRQSKQLEELTGRMKECKRLIK
EFDREIKVEESKNPPEVNKQLNDEKQSMIKELNSYVQLRKTYMNSLDNKRVELFDMGAGA
SEPMAEENVRMASAMSNQELVDAGMKTMNETDQAIERSKQVVEQTIEVGTQTAGTLKGQT
EQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLLLIVCGVIAIIIVKIVNPS
NKDIRDIPGLAPPAPSRRLL
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgaattgcagatgagtccgcaattggagcagatccatggtgaaatcaaagac
aactttcgagctctctcaaatggcttccagaggctaaacaatattaaagattctaataga
caaagtaaacagctggaggaacttactgggaggatgaaggagtgtaaacggttgattaaa
gagtttgaccgtgaaattaaagttgaggagagcaaaaatcctcctgaagtaaataagcaa
ctcaatgatgagaagcaatccatgataaaagagctgaactcctatgtccaactgaggaaa
acgtatatgaatagccttgataacaaaagagttgaactctttgacatgggagctggagca
agtgaacctatggctgaagaaaatgttcgaatggcatcagctatgtcaaatcaagaactt
gttgatgctgggatgaagacaatgaatgagactgatcaggccattgaacgctctaaacag
gttgttgaacaaacaattgaagtgggaactcaaactgctggtaccttaaaaggccaaact
gaacaaatgggacgcattgttaatgagctggatactattcagttctctattaagaaggcc
tcacagctagtgaaggagattgggaggcaggttgctactgataagtgcataatgctattt
ctacttcttattgtctgcggtgtaatagccataatcattgtgaagattgtcaaccctagc
aacaaagatatcagggacattcctggactggctccaccagccccctcaaggaggctgtta
taa
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