Populus trichocarpa (black cottonwood): 7477407
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Entry
7477407 CDS
T01077
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03020
RNA polymerase
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
7477407
09124 Replication and repair
03420 Nucleotide excision repair
7477407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7477407
03400 DNA repair and recombination proteins [BR:
pop03400
]
7477407
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
7477407
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
7477407
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
7477407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
7477407
NCBI-ProteinID:
XP_024454924
LinkDB
All DBs
Position
4:complement(3409757..3419070)
Genome browser
AA seq
1198 aa
AA seq
DB search
MEDLDEYDQQPMNEDMEPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT
MQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA
ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE
KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAES
QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC
YDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLP
HVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR
KLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL
NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV
YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRL
RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDE
GGWHDLVSKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGV
CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH
LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK
EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYT
RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT
YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD
NISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI
LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN
LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKGA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccttgacgagtacgatcaacagccgatgaatgaagatatggaaccagaagaa
gaagacgctgatgaggagatcacgcaggaagatgcctgggccgtcatttctgcttatttt
gaagagaaaggcttggtgagacaacaactcgactccttcgatgagtttattcaaaatacg
atgcaggaaatcgttgacgagtctgctgatattgagattcggcctgaaagccagcacaat
ccgggtcaccagtctgattttgctgagactatctacaagatcagttttggccagatatac
ttgagtaagcccatgatgacagagtctgatggagaaactgcaactttgtttcccaaagct
gcaaggttgaggaacctgacatactcggctcctttgtatgtggatgttacaaagagggtt
ataaagaaaggtcatgatggtgaagaagtcactgaaactcaagacttcaccaaagttttc
attggaaaggtccctattatgcttcgatcaagttattgcacattataccagaattcagaa
aaggatttgacagagcttggcgagtgtccgtatgatcagggtgggtatttcattatcaat
ggtagtgaaaaggttctaattgctcaggagaagatgagcaccaatcatgtgtatgtgttc
aagaagaggcagccaaacaagtatgcatatgtaggagaagttcggtctatggcagagtct
cagaaccggccacccagtaccatgtttgtgcggatgctttctcggactagtgctaaaggg
ggctcttcagggcaatacatccgtgctactcttccatacattcgaactgaaattccgatt
atcattgtttttcgtgctttgggttttgttgctgacaaagacattttggaacacatatgt
tatgatttcgctgatacacaaatgatggagttgcttcggccatctctggaagaggcattt
gttattcaaaatcagcaggttgctcttgactacattggaaagcgtggggcaactgttggt
gtaactagggaaaaaaggattaagtatgccaaagagattcttcaaaaagaaatgcttcct
catgtcggtgttggagaatactgcgagaccaaaaaagcttattacttcgggtatatcatt
caccggcttttactttgtgcacttggccggagggcagaagatgatagggatcattatgga
aacaagcggcttgaccttgctggtcctttacttgggggcttgtttagaatgttattcaga
aagttgaccagggatgtcaggtcttatgtgcaaaagtgtgttgataatgggaaggatgtt
aacctacaatttgccattaaagcaaaaaccattaccagtggtcttaaatactcacttgcc
actgggaactggggacaagcaaatgcagctggaacaagagctggagtgtcacaggtgtta
aatagattgacatatgcctctacactgtcacatttaagaagattaaattctccaattggg
cgtgaagggaaattggcaaaaccaaggcagctacataattcacaatggggaatgatgtgt
cctgctgaaacacctgaaggacaagcttgtggattagtgaagaatctcgcattgatggta
tacattacagttggatcagctgcatatcccatcctggagtttttagaagaatggggtacc
gagaattttgaggaaatatcccctgcagttattccccaagcaacaaaaatttttgtcaat
ggtggctgggtgggtatccatcgtgatcctgatatgttggtgaagacattgagacggctg
cggagacgggttgatgtcaatactgaagttggggttgttagagatattcgcttgaaagag
ttgcggatttacactgactatggccggtgcagtcgtcctctattcattgtggagaaacaa
aagcttcttataaggaagaaggacatccatgcactgcaacagagggaaaccccagatgag
ggtggctggcatgatcttgtgtcaaagggattcattgaatatattgacactgaggaagaa
gagaccactatgatatccatgaccatacatgatcttgtacaagcgaggattaatccagag
gaagcatattctgatacttacacccattgtgagatccacccatcattgattttaggtgtt
tgtgcttctatcattccttttcctgaccataaccagtccccacgtaacacttaccaatct
gctatgggaaagcaagccatgggaatttatgtcaccaattaccaatttcgaatggatacg
ctggcttatgttctctattatccccaaaagccacttgttactacaagagccatggagcat
cttcattttcggcaacttcctgctggcattaatgctattgttgcgattgcttgttattct
ggatataaccaagaagattctgttattatgaaccaatcatcaattgatcgtggattcttt
agatcacttttcttccgttcatatagggatgaggagaaaaagatgggcacacttgttaaa
gaggattttggtcgcccagacagaagtaacacaatgggcatgcgccatggctcttacgat
aaattggatgatgatggtcttgcacctcctggcacaagagtttcaggggaggatgtgatc
attggaaagacgactccaatcgctcaggaagaagctcagggacagtctgcacgctacacg
aggcgtgatcacagcataagtttacgtcacagtgaaactggaatggtggatcaagttctg
cttacaacaaatgctgatgggttgaggtttgtgaaagtaagggtcagatctgtccgcata
cctcagattggagacaagtttagtagtaggcatggtcaaaagggaactgttggcatgact
tacacacaagaagacatgccttggactgtggaaggcatcactcctgatattattgtcaac
ccacatgctattccctctcgaatgacaattggacagcttatcgagtgtattatgggaaag
gttgcagcacatatgggaaaggaaggggatgccacaccatttactgatgtcactgtggat
aatattagcaaagctcttcacaagtgtgggtatcaaatgcgagggtttgagaccatgtat
aatggtcacactgggcgccggctgtcagcgatgattttccttggtcccacttattatcaa
aggctaaaacatatggttgatgacaagatccattcccgtggaagaggccctgtgcagatc
ctcacaaggcagcctgctgaaggaaggtcacgtgatggtggtctccgctttggtgagatg
gaacgagattgcatgatagcacatggtgccgctcacttcttgaaagagaggctatttgac
cagagtgacgcatatagagtccatgtctgtgagcgttgtgggttgatagctattgcaaat
ctcaagaagaattcttttgaatgcagaggttgcaagaacaaaaccgacattgttcaggtg
cacattccttatgcctgtaagctactcttccaagagcttatggccatggccatagctcct
agaatgcttacaaaagatattaaacaggccaagagccagaagaagaagggagcttaa
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integrated database retrieval system
