Populus trichocarpa (black cottonwood): 7477421
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Entry
7477421 CDS
T01077
Name
(RefSeq) ubiquitin receptor RAD23d isoform X2
KO
K10839
UV excision repair protein RAD23
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03420
Nucleotide excision repair
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7477421
09124 Replication and repair
03420 Nucleotide excision repair
7477421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pop03051
]
7477421
03400 DNA repair and recombination proteins [BR:
pop03400
]
7477421
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
7477421
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
7477421
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
UBA_RAD5A
DUF6264
Rad60-SLD_2
TECR_N
Crinkler
Dsc3_N
Ubiquitin_4
UBA_3
Motif
Other DBs
NCBI-GeneID:
7477421
NCBI-ProteinID:
XP_002305813
UniProt:
B9H2Y8
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Position
4:8740528..8750954
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AA seq
385 aa
AA seq
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MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD
ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA
LPQSAAESSPAVVTSALLDTNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETVVRAL
RAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVNPPALAPQPVVAPNSGPNAN
PLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPYLMR
LIQEHQADFLRLINEPVEGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAIVLE
VYFACNKNEELAANYLLDHMHEFDE
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttgtaaagactttgaagggtaccaacttcgagatcgaagttaaacctgaa
gatacggtggctgatgttaagaaaaacatagagagtgtacagggagcggatgtttatcca
gcggcacaacagatgctagtttatcaagggaaagtacttaaggatgatacaacattggat
gaaaataaagtttctgaaagtagtttttttgttgttatgttaagcaagagtaaggtttca
tctggtggaccctcaactgcaccagctgcaccagcaagccaagccccacctgcgagttcc
ttgccttctaatgtgacacaaccatcaataacatctcaagctcctgtaccagctgctgct
ttgccacaatctgctgctgaatccagtcctgctgtagttacttcagctcttttagataca
aacatgtatgggcaagcagcatcaaatctcgttgcaggaagtaatttagaagcaaccatt
caagagattcttgatatgggtggaggagactggaaccgagaaacagttgttcgtgctcta
cgtgctgcattcaacaaccctgaacgagctattgattatttatactctggtattccagag
caagctgaagttccaccagttgcccaagttgtccaaggtccagcaagtggcaacgctgtg
aatcctccagctctggctccacaaccagttgtggctcctaatagcggtccgaatgcaaat
ccactagatctctttccacagggccatcacagtacgggttctaatgctggtacaggcaac
ttggattttttacgcaatagccaacagttccaagccttgcgagctatggtgcaagcaaac
cctcaaatcctacagccaatgcttcaggagctagggaagcaaaatccatacctgatgcgt
ctcattcaagagcatcaggctgatttcttgcgcttgataaacgaacctgttgaaggagag
gggaatgtgctgggccaattggcctctgcaatgccacaagcagtgactgtcacccctgag
gagcgcgaggcaattgaacgtcttgaagcaatgggctttgatcgagccatagtattggag
gtgtattttgcatgcaacaagaatgaagaactggcggccaactatctattagaccacatg
catgaattcgacgaatga
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integrated database retrieval system
