KEGG   Populus trichocarpa (black cottonwood): 7477810
Entry
7477810           CDS       T01077                                 
Name
(RefSeq) SART-1 family protein DOT2 isoform X1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7477810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7477810
   04121 Ubiquitin system [BR:pop04121]
    7477810
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    7477810
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7477810
SSDB
Motif
Pfam: SART-1
Other DBs
NCBI-GeneID: 7477810
NCBI-ProteinID: XP_002297938
UniProt: B9GK56
LinkDB
Position
1:6500521..6508126
AA seq 862 aa
MDMDWSESRHERREERDDVDDKVNGVEKSSKHTRKKSGRGEERERERDRDHKSKDRERSK
KTSDNDVGKDKSRDSKVKDKEYDREKSREKDKDRKDRGKEKERERDREKKEKERERVKEK
EKHKDREKDRDNDKERERGREKTKERERDREADQDKERSREKDRASRKSNEEDYDDKVQM
DYEDEVDKDNRKQGKVSFRDEDDQSAEGASAGAHSSASELGQRILKMKEERTKKKSEPGS
DILAWVGKSRKIEENKYAAKKRAKHLSKIFEEQDNIGQGGSDDEEADQHNAYNLAGIKVL
DGLDKVLEGGAVVLTLKDQNILADGDINEEVDMLENVEIGEQKRRDEAYKAAKKKTGIYE
DKFNDDPASEKKMLPQYDDANADEGVTLDERGRFTGEAEKKLEELRRRLQGTSTSARLED
LNSSGKISSDYFTHEEMLQFKKPKKKKSLRKKDKLDIDALEAEAVSAGLGIGDLGSRKDG
RRQAIREEQERSEAEMRNNAYQSAYAKADEASKSLRLDRTLQTKVEEEENLVFADDEEDL
YKSLERARKLALKKQEAEASGPLAIAHLASTTLSSQIADDKNPETGESHENKLVFTEMEE
FVSAIQLAEEVHKPDNEDVFMDEDEPPRVSDEEQKDEAGGWMEVPDNSKDENPVNEDEEI
VPDETIHEVAVGKGLSGALKLLKERGTLKESIDWGGRNMDKKKSKLVGIVDDDVGTNNDN
KFKDIRIERTDEFGRIMTPKEAFRMISHKFHGKGPGKMKQEKRMKQYQEELKLKQMKNSD
TPSLSVERMRGAQAQLKTPYLVLSGHVKPGQTSDPRSGFATVEKDFPGGLTPMLGDKKVE
HFLGIKRKPETGFSGAPKKPKI
NT seq 2589 nt   +upstreamnt  +downstreamnt
atggatatggactggtctgaatctaggcacgagcgacgtgaagagagggatgatgtggac
gacaaggtgaatggagttgaaaaatcgagtaagcatactaggaagaagagcggcagagga
gaggagagagagagggagagggatagggatcataagagtaaagacagggaacggtcgaag
aaaaccagcgataatgatgttggtaaagataagagtagagatagtaaggtgaaggataaa
gaatatgaccgagagaagtctagagagaaggataaggataggaaagatcgagggaaggaa
aaggaaagggagagggatagggaaaagaaggaaaaggaaagggaaagagtgaaggagaag
gagaagcataaggatagagagaaggacagggataatgataaagagagggagagggggaga
gagaagactaaggagagagagagagacagggaagcggatcaagataaagagaggtccaga
gagaaggatagggcaagcagaaaaagcaacgaggaagattatgatgacaaggttcagatg
gattatgaagatgaagtggacaaggataatcgaaaacaagggaaggtttcttttcgtgat
gaagatgatcaaagtgctgaaggtgcatcagctggagctcactcatctgcctcggagctt
gggcaacgcattttgaagatgaaggaagaaagaacaaagaaaaagtctgaacctggttct
gacattttagcatgggttggtaagagtcgcaagattgaggagaacaagtatgctgcgaaa
aagagagccaagcatctctcaaagatttttgaggagcaggacaatattggtcaaggaggc
agtgatgatgaggaagcagaccagcataatgcttataatcttgctggaatcaaggttctt
gatggccttgacaaggtattggaaggcggagctgttgttttgacactcaaagatcagaat
atacttgcagatggtgacatcaatgaagaggttgatatgcttgaaaatgtggaaattgga
gagcagaagcgccgggatgaggcttataaagctgctaagaaaaagacgggtatctatgaa
gacaagttcaatgatgatcctgcttcagagaagaaaatgcttccgcaatatgacgatgcc
aatgcagatgagggcgtaactcttgatgaaaggggccgcttcactggcgaagcagagaaa
aagctggaggagctccgcagaaggctacaaggtacttccacaagtgctcgcttagaagat
ctaaactcatctggaaagatctcatcagattactttactcatgaagagatgcttcagttt
aaaaagccaaagaaaaagaaatctttgcgaaagaaggataagctagatatagatgccctt
gaagcagaagctgtgtcggcagggttgggtattggagatcttggttctaggaaagatggg
agaaggcaggccattagagaggaacaagagagatctgaggctgaaatgagaaacaatgcc
taccaatcagcttatgctaaagcagatgaggcatcaaaatcactgcgactagatcgaact
ctacaaactaaagtggaggaagaggaaaatctagtgtttgcagatgacgaagaagatctt
tataagtcattagaaagagcaaggaaattagctcttaaaaagcaagaggcggaagcatct
ggtcctctagcaattgctcaccttgcctccaccactttaagcagtcaaattgcagatgat
aaaaaccctgaaactggagagtcacatgaaaacaaacttgtgttcaccgagatggaagag
tttgtctcagctattcagcttgctgaagaagttcacaagcctgacaacgaagatgttttc
atggacgaagatgaaccaccaagagtttctgatgaagaacaaaaggacgaggctggtgga
tggatggaagttccagacaacagtaaagatgaaaatcctgtcaatgaggatgaggagata
gttcctgatgaaaccatacatgaggttgctgttgggaaaggattatctggtgcactgaag
ttgcttaaagagcgaggtacacttaaagaaagtattgactggggtggcagaaatatggac
aagaaaaagagcaagcttgttggtatcgtagatgatgatgttggtactaataatgataat
aagttcaaggatatccgcatcgagaggacagatgaatttgggcgaattatgactccgaag
gaagcctttcgaatgatttctcataaattccatgggaaggggcctggcaaaatgaagcaa
gaaaagagaatgaaacaataccaggaagaattgaagttgaagcaaatgaaaaattcagat
acaccatcactgtctgtggagcggatgaggggagctcaagctcaattaaagacaccttac
cttgtcctcagtggtcatgttaaaccagggcaaaccagtgatcctagaagtggcttcgca
actgttgagaaggatttcccaggaggcttaacacccatgctcggtgataaaaaggttgag
cacttcttggggataaagcgcaagcctgagactggattctctggtgcaccaaagaagcct
aaaatttga

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