Populus trichocarpa (black cottonwood): 7477962
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Entry
7477962 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7477962
KO
K14557
U3 small nucleolar RNA-associated protein 6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
7477962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7477962
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
7477962
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U3_assoc_6
UTP6_C
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
TPR_19
ARM_TT21_N
SPOB_a
Motif
Other DBs
NCBI-GeneID:
7477962
NCBI-ProteinID:
XP_002310740
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All DBs
Position
7:3277214..3281313
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AA seq
643 aa
AA seq
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MADTVQYKLERMVDELDDLERKGIFTRQEIAEIVKQRRKFEYRLKRPSPLKQDFLAYIDY
ETQLDSLRRLRKKSVARELEKQGDKRRRRNKKSVSDFAGISRIVEIYRIAVMRFKGDLEL
WFRYLEFCKDKKNGRMKKVLAQLIRFHPKAPGVWIYAAAWEFDHNLNVSAARALMQNGLR
VCPHSEDLWVEYLRMELTYLNKLRVRKVALGEEKENVVHDYDMLLDEERGNDDGSNAGTE
VSEKKVDLFREKGLLILQTIYTGAVEALPSSFGLRKRLLEILEATDLTHSEEMHKEMLSD
MKRDFSREPEYWDWLARLEMTDSKSMSEMSVTLALPQFQKAIQVYEEALQFLPSPMMFNL
YIKFLMDAIAPKGGENDPSKVSSPTEDYISHLLVVYEKADVVGYMTEDLACQYVSFYLQL
GRFDEARKLADRLCSGKLSDSEKLWILRASMEIKSFTDDTSAPSKDDFQYVLGLLRSALT
KVSISQAEDLWLMALNVFAKQKKYLDKLVEISLISVAKDGGSDDGFSLSSAIVNFMLQKD
GIHKARKTYKRFLALPHPGLVLYRCCIELEVNLASVGDKDCLANARKLYESALATYGQDV
TLWQNYHSMEIKLGTSETANAVCWRARKTLKNSAAFVAAPDLY
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacagtccaatacaagctcgaacggatggtcgacgagctagacgacctagaa
cgtaaaggcatattcacgcggcaagaaatagcagagatagtgaaacaaagaagaaaattt
gagtacagattgaagaggccaagtcctttaaagcaagatttcttagcatatattgattac
gagactcaacttgactcactacgtagactacgaaagaaatcagtggcgcgcgagctggag
aagcaaggggataagaggaggaggagaaataaaaagtctgtttctgactttgctgggatt
tcaaggattgttgagatttatagaattgctgttatgaggtttaagggagatttagagctt
tggtttaggtatttggagttttgtaaggataaaaagaatggaagaatgaaaaaggttttg
gctcaattaattaggtttcatccaaaggcgcctggagtttggatttatgctgcagcttgg
gaatttgatcataacttgaatgtttcagctgctcgtgctcttatgcagaatggtttgagg
gtatgcccacattcagaggatctttgggtagagtatcttcggatggaattgacatatctt
aacaagttaagggtgcggaaggtagcgctcggagaggagaaggaaaatgtggttcatgat
tacgatatgttgcttgatgaagaaaggggaaatgatgatggatcaaatgctggtactgag
gtgtcagagaagaaagtggatttgtttcgagagaaaggtttgctcattcttcagacaatc
tatactggagctgttgaagctctgccttctagttttggcttgagaaagaggttattagag
atactggaagcaacagacttgactcattcagaagaaatgcataaggagatgctaagtgat
atgaaaagagacttttccagagaaccagaatattgggactggcttgcaagacttgaaatg
actgattctaagagtatgtcagagatgagcgtaactctagcgcttcctcagtttcaaaag
gcaattcaggtatatgaggaggctttacaatttctgccttctccaatgatgtttaattta
tatataaagtttttgatggatgctattgctcccaaaggaggagaaaacgatccttctaag
gtctccagccccactgaagattatatttcacaccttttggtggtatacgagaaggctgat
gtggtgggatacatgactgaggatcttgcttgtcaatatgtttcattttacctgcaactt
ggtaggtttgatgaagccagaaaacttgcagacaggctttgcagcggaaaactctcagat
tcagaaaagttgtggattttaagggcctctatggaaataaaatcttttactgatgatact
tctgcaccaagtaaggatgatttccaatatgtgttaggactccttagaagtgcattgact
aaagtgtcaatatcacaagctgaggacttatggctaatggcactcaatgtttttgcaaaa
caaaagaaatatctggacaagctggttgagatatctcttatctcagtagccaaagatggt
ggtagtgatgatggattttccctctcttctgctattgtaaattttatgcttcagaaggat
ggaattcataaagcaagaaagacatataagcgatttctcgcactaccccatcctggtctt
gttttgtacagatgttgcatcgagttggaagtgaaccttgcatctgttggtgataaggat
tgccttgcaaatgcccgaaaactatatgaatctgcactcgcaacttatggccaagatgtg
accttgtggcaaaattaccactcgatggagattaagttgggaacatcggaaacagcaaat
gctgtttgttggcgtgcacggaagacactcaaaaactctgctgcatttgttgctgctcca
gatttgtactaa
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