Populus trichocarpa (black cottonwood): 7477983
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Entry
7477983 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP58 isoform X4
KO
K14307
nucleoporin p58/p45
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7477983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7477983
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7477983
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF-3_zeta
VPS13_N
Tim54
Motif
Other DBs
NCBI-GeneID:
7477983
NCBI-ProteinID:
XP_002310761
UniProt:
B9HEE7
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All DBs
Position
7:2872996..2877524
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AA seq
506 aa
AA seq
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MAFSFSTPPQQTPSLFQPQPQPFQQSSPLFPQQQQQQQPQQQFQQQQQQFQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQLYLFTNDKAPASYSTKWEDLHPDSQKTLLQIEERILE
YRDESKRLDQCSRLYDSSVSNEGFELDASQIIQELGGISTSMERQKALLQELMTNVKDML
RNTEMAVRSFMMLHPRFLHSNAGGGASNATAPSQPPGTTGIPGSTSQPASSSIVPVFDFY
SGLPKKPSPFLQQTVARFEKYLGECSQWIEELEQLLLLDSERNSSHPGSSLLQSLPKVMS
NVHDFFVHVAAKVESIHQYIESMKTAYLVDQRRRGDGNDPFLEADRRERARKEAAAKRAH
PTLHLPANSQPSTQGAGLFASSATSSASTAPQASTATAPAPASSGNAFSLFNTPSVPSSS
MSSSLFATPTTSAPVSTLFGSAATPSLFGSATQAFGASSSAPALGSASTPSLFGSTTPAF
GTVAGSGASFGPTSKPSRPKYRTVRR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcattttctttttcaactccaccacagcaaaccccatctctgtttcagcctcagcct
cagccttttcaacaaagcagccctctttttccacagcagcagcagcaacaacagccacag
cagcagtttcagcaacagcagcagcagtttcagcaacagcagcaacagcaacagcaacag
caacagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcagcaa
cagcagcaattgtatctttttactaatgacaaggctcctgcaagttatagtactaaatgg
gaagatcttcacccagattcccagaaaactttgcttcagattgaggagcggatattggag
tatagggatgagagtaagaggctagatcagtgtagtcgcctttacgactcttcagtttcc
aatgaaggatttgagcttgatgcgagccaaattattcaggaacttgggggaatcagtact
tccatggagagacagaaagctcttttacaagaacttatgactaatgttaaagacatgtta
cggaacacagagatggctgttcgttctttcatgatgttacatcctagattccttcattct
aatgcaggaggtggtgcttcaaatgccacagcaccatcccagcctcctggaacaacagga
atacctggttccactagtcagccagcatcttcctctatagttccagtgtttgatttttac
agtggccttccgaagaaaccatctccctttttacagcagacagttgctagatttgaaaag
tatttgggtgaatgcagccagtggattgaagaattagagcaactgctcctcttagattct
gagaggaactcttcccaccctggatcctcattattgcagtctctgccaaaagtcatgtca
aatgtgcatgatttttttgttcatgtggctgctaaggtggagagcattcatcaatacatc
gaatccatgaaaacagcctatcttgttgaccagcgtcgtcgaggggatgggaatgatcca
ttccttgaggctgatcgacgtgaaagagcaagaaaagaagctgctgctaaaagggcgcat
ccaactttgcatttgcctgcaaattcacagccttccacacaaggtgctggtttgtttgca
agctcggcaacttcttcagcatcaactgctccccaggcatctacagcaacagcaccagca
ccagcatcttcaggaaatgctttctctctttttaacacaccttctgtgccatcttcctcc
atgtcatcttctttgttcgcaacaccgacaacctctgctccagtatccactttgtttggg
tcagctgcaactccctctttatttggcagtgctactcaagcttttggcgcttcttcatca
gcaccagctcttggctctgcttcaactccctctttgtttggcagtaccactccagctttc
ggtacggtggcaggatctggcgctagcttcggacctacatctaaaccatcaagaccaaaa
tatcgaactgtccgtcgctaa
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