Populus trichocarpa (black cottonwood): 7478108
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Entry
7478108 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 12b isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7478108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7478108
03036 Chromosome and associated proteins [BR:
pop03036
]
7478108
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7478108
Coactivators
SAGA/TFTC/STAGA complex
7478108
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
7478108
STAGA complex
7478108
TFTC complex
7478108
SAGA complex
7478108
SLIK complex
7478108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
7478108
NCBI-ProteinID:
XP_024440403
LinkDB
All DBs
Position
1:complement(14549827..14557332)
Genome browser
AA seq
603 aa
AA seq
DB search
MAENAAASPKPLPSQNTVIDPSSQAATLLNTNTTTLTQTQTPNVSNLPQNTQISSSSSLE
HSQIPASPSLPSQQQQQQQNVTAMSGYQIQQTLQRSPSMSRLSQINQQQPNQYGGVLRQQ
QQQQQQGLYGQMNFGGSASIQPNSQQNQQLGGANSSRSALLGQTGHLPMLTGTAAAAAQL
NLPSQLLASPRQKAGLVQGSQFHPGNSPGQSLQGIQAMGVMGSLNMGSQIRPNGALTYAQ
QRINAGSMRQQPVQQNPLTSQVQSLQRTPSMAYMNPQMSGLAQNAQPTMMQNSLSQQQWL
KQMPTISGSASPSFHLQPRQSQALIQQQLASSGQLHQNLMAQQLSQLVQQQPQMGHQQLH
QQKQQLLQQQQQQLQLQLQQQQQQLQQVPLHQQQQQHQQQQQSPRMPGPTGQKSLSLTGS
QPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSHGKLDPDVEELFLEIADDF
IDSVTTFACSLAKHRKSSTLESKDIMLHLEKNWHLTIPGFSTEEQKHQKRPLPSDLHKKR
LDMIRALMESSQSEGNNINPKEMLRQGLGNPVVTNHLIRPSPSSEQMVSQSTGSPMVQQI
TRF
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgcagccgcttcgcctaaacctctcccttctcagaatacagtaatagac
ccatcgtcacaagcagcaaccttattgaacactaacacgacaaccttaacacagacacaa
acaccaaacgtatccaatttacctcaaaacacacaaatctcttcctcttcttcacttgaa
cactcccaaatccctgcttcaccttctctcccgtcgcagcagcagcagcagcagcagaat
gtcacagcaatgtcaggatatcaaatccaacaaacccttcaaagatctccttctatgtcg
cgcttgagtcaaattaaccaacaacaaccgaaccaatacggtggcgttttgaggcagcaa
cagcagcaacaacaacagggcctgtatgggcagatgaattttggcgggtctgcttcaatt
caaccgaattcacagcagaatcaacaactgggtggggcaaattcgtctcgctcagcactt
ctcggccaaactgggcaccttcctatgttgaccgggacagctgccgccgccgctcagttg
aacttgccctcacagttgctggcttcaccaaggcagaaagctgggttagttcaagggtct
cagttccatcctggtaattctccggggcagtctttgcaggggatacaagcaatgggagtg
atgggatcactaaatatgggttcacaaataagacctaatggggcactcacatatgctcaa
cagcgaataaatgcagggtcaatgaggcagcaacctgtgcaacaaaatccgctcacctct
caggttcaaagcctacaaaggacaccatcaatggcatatatgaatcctcagatgtcaggg
ctggctcagaatgcacagccaactatgatgcagaactctctgtcacagcaacagtggttg
aagcaaatgccaacaatatctggttctgcctcgccttcattccatcttcaaccgaggcaa
tcacaggctctcatacagcagcaattggcttcatctggtcaactgcaccagaatttgatg
gcacaacagttatcccaactggtacagcagcagccccaaatgggacaccaacaacttcat
cagcagaagcagcaactactacagcaacagcagcagcagctgcagctgcagctgcagcag
cagcagcaacaattgcaacaagtgcctctgcatcagcagcagcaacaacatcaacaacaa
cagcaatctccaaggatgccaggacccacaggccagaaatctcttagtttgacaggatca
cagccagatgcaacagcatctggtacaactacaccaggggggagttcaagccaaggaaca
gaagcaacaaatcaacttcttgggaagagaaagatacaagacttggtttcacaggtggat
tcacatggaaagctagatcctgatgttgaagaactttttctggaaattgctgacgacttt
attgattctgtgaccacatttgcttgcagtttggctaagcatcggaaatcttcaacttta
gagtccaaggatataatgcttcacttagagaaaaactggcatttaaccatccctggattt
tcaacggaagagcagaagcaccaaaaaagacctttgcctagcgatctccacaagaagcgt
cttgatatgattcgtgcattgatggagtcctctcagtctgaaggaaataatatcaatcct
aaagagatgttaagacaagggcttggcaacccagttgttaccaatcacttgataagacct
tcaccaagttcagagcagatggtttcacaatcaactggttctccaatggtgcagcagatt
acacggttttaa
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integrated database retrieval system
