Populus trichocarpa (black cottonwood): 7478122
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Entry
7478122 CDS
T01077
Name
(RefSeq) peroxisome biogenesis protein 1 isoform X1
KO
K13338
peroxin-1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7478122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7478122
Membrane trafficking [BR:
pop04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
7478122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
PEX-1N
AAA_16
AAA_lid_3
AAA_22
NACHT
AAA_14
AAA_5
NPHP3_N
ATPase_2
RuvB_N
Bac_DnaA
AAA_18
nSTAND3
RNA_helicase
AAA_7
NB-ARC
IstB_IS21
AAA_28
AAA_24
AAA_29
TIP49
AAA_33
ORC-CDC6-like
AAA_2
Mg_chelatase
TsaE
DUF815
AAA_17
KAP_NTPase
NTPase_1
ABC_tran
AAA_11
AAA_23
Sigma54_activat
APS_kinase
Zeta_toxin
AAA_13
AAA_lid_PRS2_C
FtsK_SpoIIIE
cobW
T2SSE
Motif
Other DBs
NCBI-GeneID:
7478122
NCBI-ProteinID:
XP_002298113
UniProt:
B9GKY7
LinkDB
All DBs
Position
1:14948290..14964099
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AA seq
1133 aa
AA seq
DB search
MEFQVKHVGGIENCFVSLPINLIQILESTRRPAPLPPLLTLELRSPSANRHWTVAWSGAT
SSSSSIEVAQQFAECISLPDHISVQVRAVSNVVNATLVTIEPHSEDDWEVLELNAEQAEA
SILKQVRIVNEGMRFPLWLHGGAVITFLVVSTSPKRAVVQLVPGAEVAVAPKRREKVVNK
QDATVQSYNKESNMAKALLRLQDLDRRLFHNCDVKGVELATAPTCVAYMHPETAQMFSLD
SLQLVTLVPRLSSKDGVKTPDSDALRVKSASPKEANNGTLTDKKEFHQAIVRLLFSDSVA
KGHVMIARSLRLYLRAGLHSWIYLKGWITDLKDIASLSLSPCYFKMPGQDKPVEKPGLEL
IDIDKLQKPRKTSLDTYMDAVDWSIHDKIFASLSQDFPSKQEEETGYLPDNKKGLRRLLQ
AWYRAQLDAIASTSGVEVNSLIVGKETLLHFEVKGYDFGIDRKTREKASSYSNGSLKNRN
KTGGTQLEFLYVLSIPEESVHGIKVNAYSLAFNERKKDNLGVGLFERLKLGGPVSFYSLK
ESNSFTGFSSNASSLSWMGTTASDVINRLMVLLYPPYSTWFNTYNLPLPGHILIYGPHGS
GKTTLARAVAKSLEEREDLFAHIVFVSCSGLTLDKASAIRQTLSASISEALDHAPSLVIF
DDLDTIVSASSDSEGSQPSTSVVALTKFLSDFIDEYGEKRKSTCGIGPIAFIASVQTLEN
IPQSLSSSGRFDFHVQLPAPAASEREAILKHEIRRRSLLCSDDILLDVASKCDGYDAYDL
EILVDRTVHAAIGRFLPSHSTFEKHDIPTLFKDDFSRAMHEFLPVSMRDITKSAPEGGRS
GWDDVGGLSDIRNAIREMIELPSKFPNIFVQSPLRLRSNVLLYGPPGCGKTHIVGAAAAA
CSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVT
DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSRKERLEIL
AVLSRKLPLANDVDIETIAGMTEGFSGADLQALLSDAQLAAVHEHLSSADMGDPGKMPVI
TDDLLKTTTSKARPSISEAEKQRLFGIYSQFLDSKRSVASQSRDTKGKRATLA
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggaattccaagtgaagcacgtgggcggtatagagaactgctttgtctctcttcctatc
aacctaatccaaatccttgaatccactcgccgccctgctcctctccctccacttctcact
cttgaactacgctctccgtccgccaaccgtcactggaccgtcgcttggtccggtgctacc
tcctcctcttcctccatcgaggttgcgcaacaatttgcagagtgcatttcattgcctgat
catattagtgttcaagtcagggctgtttctaatgttgtcaacgcgactttagtaaccatt
gaacctcatagtgaggatgattgggaagttttagaacttaacgctgaacaagccgaggct
tccatattaaagcaggtgaggattgtcaatgaaggaatgagatttcctttgtggttacat
ggcggcgctgtcattacattcctcgtggtttcaacatctcccaagagagcggtggttcaa
cttgttccaggagctgaagttgcagttgctccaaaaagacgcgaaaaggttgttaataaa
caagatgccactgtgcagtcttataataaagaaagtaatatggcaaaggccctgttgcgt
cttcaagatttagacagaagattgtttcacaattgtgatgtcaaaggtgttgagctggcc
accgcacccacttgtgttgcttatatgcatcctgaaactgctcaaatgttttctttagat
tctctgcagttggtcacacttgttccaagattgtcatcaaaagatggtgttaagactcct
gatagcgatgcattgagagtgaaaagtgcctctcccaaggaagctaacaatggaacttta
actgacaagaaagaatttcatcaagcaattgtccgccttttgttttccgattcagtggct
aaaggacatgtaatgatagctcgatcccttcgtttgtatttgagagcagggctgcactca
tggatttatttaaagggatggattactgatttgaaggacattgcatcactttcactttct
ccctgttactttaagatgcctggacaagataagcccgttgagaagcctggtctagaactg
attgacatcgataaacttcagaaaccaagaaaaactagcttggacacctatatggatgct
gtagattggtcaatccacgacaaaatttttgcttctctgtcacaagactttccttctaaa
caggaagaagagactggttatctgcctgataataaaaagggattgagaagacttcttcaa
gcatggtatcgtgcacagcttgatgctattgcttcaacttctggggtggaagttaattca
ttaattgtaggtaaagaaactttacttcactttgaagtgaaaggatatgactttgggatt
gataggaagaccagggaaaaggcatcttcttattcaaatggatctctaaagaacagaaat
aagactggtggaacgcaacttgaattcttgtatgtactgagtattcctgaggaatctgtg
cacggaataaaggttaatgcatacagtcttgccttcaatgaaagaaaaaaggataatctt
ggagtagggttgtttgaaaggctgaaactaggtggccctgtgtccttctattctttgaag
gaaagtaactcttttacagggtttagttcaaatgcttcatctttgagctggatggggaca
actgcttctgatgtgattaacagattgatggtgttgttatatcctccttatagcacgtgg
tttaatacatacaatcttcctctgcctgggcacattctaatatatggacctcacggttct
ggaaaaaccactttagcaagagctgttgcaaaatcccttgaagagcgtgaagacctcttt
gcccacatagtttttgtaagctgctctggactcactttagataaagcctcggccattcgt
caaaccctttctgcttccatatctgaagcattagatcatgcaccttcccttgtcatcttt
gatgatctggataccattgtgtcagcctcttctgactctgaaggatcacaaccttcaaca
tcggttgttgcgctgacaaaatttctctcagattttatagatgaatatggggaaaaaagg
aagagcacatgtggaattggcccgattgcctttatagcctctgtgcagactctggagaat
attccacagtcattgagctcttcaggaaggtttgacttccatgtgcaactgcctgctcct
gctgcctcagaacgcgaggctatattgaagcatgaaatccggaggcgttccttactgtgt
tctgacgacattttgcttgatgtggcttccaaatgtgatggatatgatgcatatgatctg
gaaatattggtagatagaactgtacatgctgccattggccgatttttgccttctcattct
acttttgaaaagcatgacatacccacgttattcaaggacgacttctctagggcaatgcac
gagttccttccagtttctatgcgtgacatcactaaatctgcccctgaaggtggccgttct
gggtgggatgatgttggtggtcttagtgacataaggaatgctattagagagatgattgaa
ttgccttcaaagttcccgaatatctttgtccaatctcctttacgcttaaggtcaaatgtt
ctcttatacggtcctcctggttgtggcaaaactcatattgttggtgctgctgctgctgcc
tgttctcttcgattcatatcagtgaaaggacctgagctgttgaacaaatacattggtgct
tctgaacaagctgttcgtgatattttctcaaaagctgcagctgcagcaccatgtattcta
ttttttgatgaatttgattccattgccccaaaacgagggcatgacaatactggagtaact
gatcgtgttgttaatcaatttctaactgaattagatggcgttgaagttttgactggagtt
tttgtttttgctgcaacaagtagaccagatctacttgatgctgcgttgttgagacctggt
cggttagatcgccttcttttctgtgattttccatctcggaaggagaggctggaaatccta
gcagttctttctagaaagctgcctcttgccaatgatgttgacatagaaacaatagctggt
atgacagaaggatttagcggtgctgacctacaagctcttctctcagatgcgcagcttgcg
gcagttcatgaacatttaagcagtgcagacatgggcgaccctggtaaaatgccagtcata
actgatgatcttttaaagaccactacttccaaagcaagaccatcgatatctgaagctgag
aagcaaagactctttggtatttatagccaattcttggattcaaagcgatctgttgcttca
cagtcaagggatacaaaaggcaaaagagctactctagcataa
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