Populus trichocarpa (black cottonwood): 7478135
Help
Entry
7478135 CDS
T01077
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7478135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7478135
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
7478135
SWR1 complex
7478135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
HDA2-3
Myb_DNA-bind_6
Myb_DNA-binding
ETC_C1_NDUFA5
Motif
Other DBs
NCBI-GeneID:
7478135
NCBI-ProteinID:
XP_024453757
LinkDB
All DBs
Position
3:2337414..2352116
Genome browser
AA seq
2055 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKKLKEEEQRLRKVAVNISKDVKKFWVKIEKLVLYKHQMELD
EKKKKALDKHLEFLLGQTERYSTMLAENLVEKPPEQYFAPEKPSIADRVGDDANTPLQVV
DAHCLEAQVDTADNDDEYDVQSEDEVEDDEHTIEEDEALITKEERQEELEALHNEMDIPL
EELLKRYAVEKGGRESSENGAKPCANGEEHCESKGEDISAACEMEISSSPVNAGRRCGEN
NGALPIPDNNLLEIGAYETRNQLSISEDPAREHVPYDFNDEQEDGDFDLAAEEEKDDETT
LLEEEEMAKADSNNPIDEILLLQKESEIPLEELLARYTKEPNSEVSEDESEYAPVLSDNM
SNSPGHEEELKQLDNSMDEMVEHGEHPLVEEQEKGNEEISEEGRESESKIADAAAAARSA
QPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEQRLNGILADEMGLGKTIMTI
ALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKCKRQGWLK
PNFFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLT
GTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPITGMVEGQERVNKEVVDRLHNVLR
PFILRRLKRDVEKQLPMKVEHVIFCRLSRRQRNLYEDFIASSETQATLATANFFGMISII
MQLRKVCNHPDLFEGRPIISSFDMAGVDIQLSSSICSMFSPGPYSSVDLCALGLIFTHLD
FNMVSWECDEVKAIATPSRLIEERANLANIEDVGPGSKHLKRLPGTNIFEEIRKSLLEGR
LREMKQRAASIAWWNSLRCRKKPIYSTTLRELLTVKHPIYDIHRQKVERLSSLCSSKLGD
VVLSPIERFQKMTDLVESFMFAIPAARSTAPIFWCSQTRTPVFLHSTYEEKCSEMLLPLL
SPIRPAIVRRQLYFPDRRLIQFDCGKLQELAILLRKLKSEGHRVLIFTQMTKMLDILEAF
INLYGYTYMRLDGSTQPEDRQTLMQRFNTNPKIFIFILSTRSGGVGINLVGADTVIFYDS
DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT
EFFKKLDPMELFSGHKTLQIKNMQREKNNNNGNEVSLSNADVEAALKYAEDEADYMALKK
VEQEEAVDNQEFTEEAIGRLEDDEFVNDDDMKADEPTDHEMTTYCKEGEVNLDENDCIEE
RAVTFTGNKDDVDMLADVKQMAAAAAAAGQAISSFENQLRPIDRYAVRFLELWDPIIDKA
ALESQVRFQETEWELDRIEKYKDEMEAEIDDDEEPLVYERWDADFATEAYRQQVEALTQY
QLMEEKEAEAEAEANEKESADGHLDAMVRCKVPRNPKSKSKKKPKKTKFKSLKKESLTSE
LKHMKVEASIETLSADDEDDDDDVIYPDDGTYSDTTSPYSSVQRKRKKAELAIDIDKKRS
RKNSKKFKKAPETCSFDVDSDLSGKQHGRSMELKPYEVVSDLEQKPAGRSKMGGKISIST
MPVKRVLMIKPEKLKKGNVWSRDCVPPPDSWLPQEDAILCAVVHEYGPHWSLVSETLYGM
AAGGFYRGRYRHPVHCCERFRELIHRYVLSSPEYPINNEKMSNMVSGKALLKVTEDNIRM
LLNVAAEQPDHELLLQKHFTALLSAVWRVNSRAERQQNLSSSRNALYNHGRVFNSSVNQL
PSNSSKESAKRMKFTNLGHSSKLLADALHDASSRRPDDRVSYSNLSEVAPAIGEQLEITL
EFQKEEDDSLIQFPPIISLSIPSSAPLTSVNKDRAEAHHLRASTSIAENRFRDAARACVE
GDLGWVSSSAPANDFKLRLPSKTQSLGKHKLSVSESTKPPRSKMKKTLIEHSQGHLFAEP
VSQPLPVLSSRDPNLRFDLPPIAIQDDKDEYSISCIEKELSAEMGTWDAVAHDYVLGFTS
GLDDFSSLPEFTDIG
NT seq
6168 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaaaggtccaaggtctaagcttgatcacgagacgagagctcggcgtcaaaag
gcactggaagctccaagagaaccccgtcgcccgaaaactcactgggatcatgttttggag
gaaatggtttggttgtcgaaggattttgagtcggagaggaaatggaaattggcgcaagcc
aagaaagtggctttaagagcaagcaagggcatgttggatcaggccaccagaggagaaaag
aaattgaaggaagaggagcagcggttgcgaaaagtagcggtcaatatttcaaaggatgta
aagaagttctgggttaaaatagaaaagctggtgctttacaagcatcagatggagcttgat
gagaagaagaaaaaggcacttgataagcatcttgagtttcttctaggacaaactgagagg
tactctacaatgctggcagaaaatctagtggagaaaccaccagagcaatattttgcacca
gaaaaaccgagtattgcggatagggtaggagatgatgctaatacacccctgcaagttgtt
gatgctcattgtttagaggcccaagtggacactgcagacaatgacgatgagtatgatgtg
caatctgaagatgaagtggaagatgatgagcatactattgaggaagatgaggctcttata
accaaagaagaaaggcaagaagaattggaagctctgcacaatgaaatggatattcccctt
gaggagctactcaagcgttacgctgtagagaaaggtggcagggaaagtagtgaaaatgga
gctaagccatgtgcaaatggggaagaacattgtgagagcaaaggagaagatatttctgct
gcttgtgagatggagataagcagctcacctgttaatgctggtcgtcgttgtggtgaaaat
aatggtgccttgcccattccagacaacaatttattggaaattggggcatatgaaaccaga
aatcagttaagtatctctgaggatccagccagagaacatgtgccatatgatttcaatgat
gaacaggaagatggtgattttgatcttgccgctgaagaagaaaaggatgatgagacaacc
ttgttggaggaggaagagatggcaaaagcagattcaaacaatcccatagatgagattttg
ttactgcaaaaggagagtgaaattcctttggaagaattgcttgcaaggtatacaaaggag
ccaaacagtgaagtttcagaggatgaatctgaatacgcaccagtattatcagacaatatg
tcaaattccccaggccatgaagaagaactgaagcagctggataactcaatggatgaaatg
gttgaacatggggaacatcctcttgtagaagaacaagagaagggaaatgaagaaatttca
gaagaaggaagggagagtgaaagtaagatagctgatgctgctgctgctgcaagatctgca
caaccaacaggcaatacattctcgacaaccaaagtgcgcacaaaattcccctttcttctc
aagtatcctcttcgtgaatatcaacatataggcctcgattggcttgttacaatgtatgaa
caaagattaaatgggattctagctgatgaaatggggcttggaaagacgatcatgacaatt
gctttgcttgcacacctagcatgtgaaaagggaatatggggtcctcatctgattgtggtt
ccaacaagtgtcatgcttaactgggaaacagagtttcttaaatggtgtcctgccttcaag
attttaacatattttggcagtgcaaaagagcgtaaatgcaagaggcaaggttggctgaaa
ccaaatttcttccatgtatgcataacaacttacagactggttatacaggattctaaagtc
ttcaagaggaagaaatggaagtatttgattttggatgaagctcatctgattaaaaattgg
aagtcccagagatggcaaactcttttaaatttcaattcaaaaagacgcatcttattaact
ggcacacctctgcagaatgatctcatggaactgtggtcactaatgcatttcttgatgccc
cacatctttcaatctcaccaggaatttaaggactggttcagtaatccaataactgggatg
gtggagggacaagaaagagtgaacaaagaagttgttgatcgtttgcacaatgttctccgt
ccgtttatcctccgtcgattgaaaagggacgtggagaagcaactccccatgaaagttgaa
catgtaatcttttgtagactttcaaggaggcagcgtaacttgtacgaggatttcattgct
agttcagagacacaagctacccttgccactgccaacttttttgggatgatcagcatcata
atgcaacttcgtaaagtttgtaatcatcccgacttatttgagggtcgtccaattattagt
tcttttgatatggctggtgtggacatccaattgagtagttctatttgttcaatgttttca
cctggcccatattcatctgtagatctttgtgctttggggcttatatttacacatcttgat
tttaacatggtttcttgggagtgcgatgaagtaaaggctattgcaactccttcaagatta
attgaagagcgtgccaatttggctaacatagaagatgttgggcctgggtctaaacatttg
aagagattgcctggaacaaatatttttgaagagattagaaagtcattattggaggggaga
ttaagagagatgaagcaacgggcagcatctattgcgtggtggaattctttgaggtgtcgg
aaaaaacccatatactcaacaaccctacgagaacttctcacggtgaagcatcctatctat
gatatccatcgccaaaaagttgagcgactctcctcgttatgctcctctaagcttggtgat
gttgttctttcaccaattgaacggttccagaagatgactgatctcgtggaatcatttatg
tttgcaattccagcagcacgttccactgcacctatcttctggtgcagtcagaccagaact
cctgtgtttctgcattcaacttatgaggagaaatgctctgaaatgttgttgcctcttctt
tcacctattagacctgcaattgtccggagacaactgtatttcccagacaggcgcctaata
cagtttgactgtggtaaattgcaggagcttgctattttgctcaggaagttaaagtcagaa
ggccatcgggtattaatattcacacagatgaccaagatgctggatattttggaggctttc
ataaacctgtacggctacacttacatgcgtttagatggatctactcaaccagaggataga
caaactttaatgcagcgtttcaacaccaatcccaaaatatttatcttcattctatcaacc
cgtagtgggggtgttggcatcaatcttgttggggcagatactgtaatcttctatgatagt
gactggaatcctgcgatggatcaacaagcccaagatcgctgccatcggataggacagaca
cgtgaagtgcatatctacaggttaatcagtgagagcaccattgaagaaaatatcttaaag
aaagccaatcagaagcgtgctcttgatgatctagttatacagagtggaggatacaacaca
gaatttttcaagaagctcgatcctatggaattattttctgggcataaaacacttcagatt
aagaacatgcagagggagaaaaacaataacaatggaaatgaggtttctttgtctaatgca
gacgtggaggctgctctgaaatatgctgaagatgaagcagattacatggcattgaagaaa
gtcgaacaggaagaggctgtagacaaccaagagtttactgaagaggccattgggagattg
gaagatgatgaattcgtaaatgatgatgatatgaaggctgatgagcctacagaccatgag
atgacaacttattgcaaagagggtgaggtgaatttagatgaaaatgattgcattgaagag
agagctgtaacttttactgggaacaaagatgatgtcgatatgttggctgatgtcaagcag
atggcagcggcggcagctgctgctggacaagctatctcatccttcgaaaatcagctacgt
ccaatagacagatatgcagtccgttttctggaactgtgggatccaattatagacaaagca
gccttggaatcccaagttaggtttcaggagacagaatgggagcttgatcgtattgagaag
tacaaggacgaaatggaagctgagattgatgatgatgaagagccattggtgtatgaaaga
tgggatgctgattttgcgaccgaggcataccgacaacaagttgaggcgctaactcaatat
cagttgatggaagaaaaggaagctgaagctgaagctgaagctaatgagaaggaaagtgca
gatggacatttagatgctatggtcaggtgtaaagtgccacgcaatcctaaatcgaagtct
aagaagaaaccaaagaaaaccaagttcaaatccctcaagaaagaatctttaacttctgaa
ttgaaacacatgaaagtggaggcatcaatagaaactttgtctgcagatgatgaggacgac
gacgacgacgtgatatatcctgatgatggtacatattcagatactacgtctccttattca
agtgtgcagagaaaacgtaagaaagcagaattagcaattgatatagacaaaaagaggtca
aggaagaatagcaagaaattcaaaaaagctcccgaaacgtgctcttttgatgtagattcg
gatctgtctggaaagcagcatggcaggtctatggaattaaaaccatatgaggtggtttct
gatcttgagcagaaaccagctggcaggagcaagatgggagggaaaatctccatcagtacc
atgccagtgaaacgggtgttgatgataaagccagagaagttaaagaaagggaatgtttgg
tcgagagattgtgttcctccacctgattcatggttgccacaggaggatgcaatattatgt
gctgttgtacatgaatatggccctcactggagcttggtcagtgaaactctgtatgggatg
gctgctggtgggttttatcggggaagataccgccatccagttcattgttgtgagagattt
agagaactaatccatagatatgttttatcttctccagaatatcctatcaataatgaaaag
atgagcaatatggtctccgggaaggcccttctcaaagtaactgaggataacatacggatg
ttattaaatgttgctgctgagcagccagaccatgagttacttctccagaagcacttcaca
gcactgctttctgctgtgtggagggtgaactctcgtgctgaacgtcaacagaacttgtca
tcatctcgaaatgctctttataatcatggaagggttttcaattcttctgtcaatcagtta
ccttcgaattcctcaaaggaatctgcaaaaagaatgaaattcactaatttgggacatagt
agcaagttgcttgctgatgcactccatgatgccagcagtagaaggccagatgatagagtt
tcctattccaacttgagcgaagttgctcctgccattggtgagcagttggaaataacattg
gaattccaaaaagaggaagatgattctttgattcaattcccacctataataagtttgtca
atacctagctcagcgccattgacatcagtaaataaggatagagcagaggctcaccatctc
agagcatccacaagtatagctgaaaatcgattcagggatgcagcaagagcttgtgttgaa
ggagatctgggctgggtttcatcttccgcaccagcaaatgatttcaagttgcggctgcct
tcaaagacgcagtccttgggaaagcacaagctctccgtctccgagtcaaccaagcctcct
aggtcaaagatgaagaaaactttaatagagcacagtcaaggacacctttttgccgagcca
gtatcccagccactgcctgtactgtcatccagggatcccaatttaaggtttgacctgccg
ccaatagccattcaggatgacaaggatgaatattctatctcatgcattgagaaggagctt
tcagcggaaatggggacctgggatgctgtcgcacatgactatgttcttggtttcacatcg
ggtcttgatgatttttcatcgttgccagaatttactgacatcggataa
DBGET
integrated database retrieval system
