Populus trichocarpa (black cottonwood): 7478294
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Entry
7478294 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7478294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7478294
03036 Chromosome and associated proteins [BR:
pop03036
]
7478294
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7478294
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
7478294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
7478294
NCBI-ProteinID:
XP_002303836
UniProt:
B9GVI5
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All DBs
Position
3:18600951..18606812
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AA seq
1067 aa
AA seq
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MASPSLLPVAGSSNEIPSIRSNLSFGTSCELDFEVETLNSEGQYKKRRTSLKSEPRCEDF
RMVEALLPTLRSVDYYMEPCLMDLAAGEVVDPGYCSRVLDFTVGRFGYGRVKFLGKTDVR
RLNLDQIVKFNRHEVIVYEDENAKPMVGQGLNKPAEVSLTLKLKLLDFNKGRINDVVEKL
RESMERQGAEFISFDPVIGEWKFLVCHFSRFGLSGDDEEDITMDDAAEVQDPAEMKGGEI
VDMDEETPEEVEANEPVLYHSLPAHLGLDPVRMNEMRTWMFPDDEEEVVEDLIGLRQKFP
YNKESIGSPLQNSTQRMSHRASSPVMRKTPLALLEYKPGSFDSSSPGTILLAQQHKGLTS
KMMKGVGFTLNLEHETPISGSHSCNVVDAGLFMGRSFRVGWGPNGVLVHSGAPVGGNNSQ
RFLSSIIHVEKVALDKVVRDENNKSRKELVDFSFDSPLNLHKAINRETKEVEIGSFKLKL
QKVVSNRLMLSEICRSYIDIVERQLEVPWLSSSARLVLMHQVMIWELIKVLFSERENSGQ
SKSVGADNEEDMMQDLKESSLEVDQEALPLIRRAEFSCWLQESVCHRVQDEVSSLNESSY
LEHIFLLLTGRQLDAAVEMAASRGDVRLACLLSQAGGLNHADIARQLDLWRSNGLDFNFI
EKERVRLYELLSGNIHGALHDLKIDWKRFLGLLMWYQMPPHTPLPIIFQTYQLLFVNGKA
PYPLPIYIDEGPVDADVHFSEKHFDLSYYLMLLHANGEGEFSALKTMLSAFSSTHDPLDY
HMIWHQRAVLEAVGIFTSKDLQVLDMGLVSQLLCIGQCHWAIYVVLHMPQCDDYPYLHAT
VIREILFQYCETWCSDESQQRFIENLDIPLSWLHEAMAVYFSYHGDLSKALEHYLECANW
QKAHSIFVTSVAHKLFLSADHSEIWRLAIAMEDHKSEIANWDLGAGIYISFYSIKNSFQD
DTSTMSELDSIESKNSACRDFLDHLKDSLDVLRDQLPMDARVAYSKMAEEISELLLSDPD
IREGSTRDAQLSCFDTVLRAPIPEDLRSNHLQDAVSLFTCYLSEMAA
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccttctctcctcccggttgccgggagttcaaatgagattccaagtataaga
agcaatctttcttttggcacttcatgtgaacttgattttgaagtagaaactttaaattca
gagggtcaatacaagaaaagaagaacgtctctaaaaagtgagccacggtgcgaggatttc
agaatggtcgaagctttgttgcccacattgcgttcagtagattattatatggaaccttgt
ttgatggacctggctgctggggaagttgtggatcctggatattgcagtcgggtcctggat
ttcactgttggaaggtttggttatggacgtgttaagtttctcgggaagactgatgttagg
aggttaaatttagatcagattgtgaagtttaataggcatgaagtaattgtatatgaagat
gaaaatgctaagcctatggttggtcagggccttaataagcccgctgaagtttctttgact
ttaaaactaaaattgttggattttaacaagggacgaatcaatgacgtggtagagaaattg
agggagagtatggagagacagggagctgaatttatttcatttgatcctgtaattggagaa
tggaagttcttggtttgccattttagcagatttggattgagtggcgatgatgaagaagat
atcacaatggatgatgcggcagaagttcaagatcctgctgagatgaaaggtggtgagatt
gttgatatggatgaagaaaccccagaagaagtagaagctaatgaaccagttctttatcat
tctcttcctgcacatcttggtcttgacccagtaagaatgaatgaaatgaggacatggatg
tttcctgatgatgaagaagaagttgttgaggatttgattggtctacgtcagaaatttcct
tacaataaagaaagcattgggtctcctctacagaattccactcagaggatgagccataga
gctagttcgcctgtcatgaggaaaacacctttagcactgcttgagtacaaacctggcagt
ttcgattccagctcccccggaaccattctgttggcccaacaacataagggcctgacttca
aagatgatgaagggagtaggctttacgctgaacctggagcatgaaacaccaataagtgga
agccattcttgcaacgttgttgatgcaggtttattcatgggccgttcctttcgtgttggt
tggggcccaaatggagtccttgttcattctggtgctccagttggaggtaataattctcag
aggtttctatcttctattatccatgtagagaaggtcgcgcttgacaaagtggtcagagat
gaaaataataaatccagaaaggaactagttgacttttcttttgactcacctttgaatctc
cacaaggcaataaaccgggaaacaaaagaagttgagataggttcatttaaactgaagctt
caaaaagttgtttctaatcgcttaatgctttcagaaatttgtcggagttatatagacatt
gttgagaggcagctggaggttccatggctttcatcctctgcgcgattggttttgatgcac
caagtaatgatctgggagttgataaaagtacttttttctgaaagggaaaatagtggacag
tcaaaatctgtgggtgctgacaatgaggaagatatgatgcaggatttgaaagaaagttct
ttggaagttgaccaagaagcacttcctcttatacggagagcagagttcagttgttggctg
caagaaagtgtttgccatcgtgtccaagatgaagtgagctccttgaatgaatccagttat
ctagaacacattttcttacttctgaccggaagacaactggatgcagctgtggaaatggct
gcttctagaggggatgtaagactggcatgtttgttgagtcaggctggtggattgaatcat
gctgacattgcacggcagcttgatctttggaggtcaaatggcctggacttcaatttcatt
gagaaggagagagtaagactttatgagttgctttctggcaatattcatggtgctttgcat
gatttaaaaattgattggaagaggttcttagggttactgatgtggtatcaaatgccacct
cacacgccattgcccatcatttttcaaacctatcagctcctttttgtcaatggtaaggcc
ccatatcctctcccaatttatattgatgaagggccagtagatgcagatgtgcatttttca
gagaaacactttgatctctcatactatctcatgcttcttcatgctaatggcgagggtgaa
tttagcgctttgaagaccatgcttagtgccttctcatcaacacatgatccacttgattat
catatgatctggcatcagcgagcggtgttagaagcagttggcattttcacttctaaggat
ctacaagttctagacatgggacttgtttctcagctcctgtgtattgggcagtgccattgg
gccatatatgtggtccttcacatgcctcagtgtgatgattatccatatctccatgctact
gttatccgagaaattttgtttcaatactgtgaaacatggtgttctgatgaatcacaacaa
cgatttattgagaaccttgacattccattatcatggttgcacgaagctatggcggtttat
ttcagttaccacggggatctctcaaaggcccttgagcactatcttgaatgtgcaaattgg
caaaaggctcattctatttttgtaacttcagttgctcataaattatttttgtcagctgac
cactcagagatttggaggcttgcaattgcaatggaggatcataaatctgaaattgcaaat
tgggacctgggagctggaatttacatatcattctattcgataaaaaattcatttcaggat
gacaccagtaccatgagtgaactggattctatcgagagcaaaaattctgcctgcagagac
ttccttgatcatcttaaggactctttagatgttttgcgggaccaattaccaatggatgca
agggtagcgtattcaaagatggcagaggagatctcagaattgcttctatctgatcctgat
ataagagaggggtcaacacgagatgctcagttaagctgctttgacactgttttgagagct
ccaattcctgaagacctccgctcaaatcatttgcaggatgccgtctctctctttacatgt
tatctttcagagatggctgcctag
DBGET
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