Populus trichocarpa (black cottonwood): 7478571
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Entry
7478571 CDS
T01077
Name
(RefSeq) ruvB-like protein 1
KO
K04499
RuvB-like protein 1 [EC:
5.6.2.4
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7478571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7478571
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pop03037
]
7478571
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
7478571
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TIP60 complex
7478571
Chromatin remodeling factors
SRCAP complex
7478571
INO80 complex
7478571
INO80 complex (yeast)
7478571
SWR1 complex
7478571
ASTRA complex
7478571
Cilium and associated proteins [BR:
pop03037
]
Motile cilia and associated proteins
Dynein assembly factors
7478571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIP49
TIP49_C
AAA
RuvB_N
AAA_22
AAA_16
AAA_5
AAA_19
Mg_chelatase
bpMoxR
AAA_18
AAA_25
TsaE
Cdc6_lid
DnaB_C
AAA_28
AAA_7
nSTAND3
AAA_11
NPHP3_N
Zeta_toxin
Rad17
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
7478571
NCBI-ProteinID:
XP_024464193
LinkDB
All DBs
Position
9:12423570..12429109
Genome browser
AA seq
455 aa
AA seq
DB search
MNIEEVQSTTKKQRIATHTHIKGLGLEPSGRAIDMAAGFVGQKEAREAAGLVVDMIKQKK
MAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI
GLRVKENKEVYEGEVTELTPEETESITGGYGKSIGGVIIGLKTVKGTKQLRLEASIYDAL
IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVSKKKEIVQDVTL
HDLDAANARPQGGQDILSLMGQMMKPKKTEITDKLRQEINKVVNGFINKGTAELVPGVLF
IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMNSPHGIPVDLLDRLVII
RTENYGPAEVIQILALRAQVEELHLDEESLAYLGEIGQRSSLRHAVQLLSPASIVAKMNG
REEIRKADLEEVCALYLDAKSSAKLLQDQQEKYIS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaagaagtacagtccactaccaagaaacagagaattgctactcacactcat
atcaagggccttggccttgagcccagtggaagagcaattgatatggctgctggctttgtg
ggtcagaaggaggctagagaagcagctggtcttgtagttgatatgataaagcagaagaag
atggctggccgtgctctcctcttagctggtcctcctggaactgggaagacagctctggct
cttggaatttcccaggaactcggcactaaggttccattttgtccaatggttggatcagag
gtatactcgtcagaagttaagaaaactgaggttttgatggaaaattttcgaagggcaatt
ggtctacgtgtcaaggagaataaagaggtctatgagggagaggtgactgaactcacaccc
gaagaaactgaaagtataacaggtggctatggtaaaagcattggtggtgtaattattggg
ctaaaaactgtcaaaggaacaaagcaactaagattggaagccagtatttatgatgccttg
atcaaggagaaggtagctgtgggagatgttatatacattgaagcaaatagtggggctgtc
aaaagagtgggtagaagtgatgcttttgctactgaattcgaccttgaagcagaggagtat
gtcccacttcctaagggagaagttagtaaaaagaaagagatagttcaggatgtaacactg
catgatctagatgctgccaatgcgaggcctcaaggtgggcaagatatattgtctttaatg
ggccaaatgatgaagcccaaaaaaaccgaaatcactgacaagctacgacaggaaataaat
aaggttgttaatgggtttattaacaagggtactgcagagcttgttcctggagttctattc
attgatgaggtacatatgctggatatggagtgcttttcatacttgaatcgtgctttggag
agctcgctgtcaccaatagtgatctttgctacaaatagaggaatatgtaacgtaagaggg
acagatatgaatagtcctcatggcatccctgttgacttgttggaccggttggtgattatc
cgaacagaaaattatggtcctgctgaggtgatacagattttagcacttcgcgcgcaggtt
gaggaactgcacttagatgaagagagtctagcctaccttggagagattggacaacgctcg
tccttgaggcatgcagttcagctattatcacctgccagcattgtggcgaaaatgaatggt
cgagaagagatacgcaaggccgacctcgaggaagtatgtgcattatatctcgatgccaag
tcatcggccaagttgcttcaggatcagcaggagaagtacatttcatga
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