Populus trichocarpa (black cottonwood): 7478754
Help
Entry
7478754 CDS
T01077
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7478754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7478754
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
7478754
Complex B
7478754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
7478754
NCBI-ProteinID:
XP_024464325
LinkDB
All DBs
Position
9:8008762..8024558
Genome browser
AA seq
1051 aa
AA seq
DB search
MANNPQFSGIQPLQPPLVGPMDPPRNLFPPPPMPVQFRPIVPVQPQQFIPVSSPHFQPVG
RGVTVMNAGLPPQPPQPQFPHPMQQLPAIPNQPSHGPPPPPPPQAILLPNAQPNRHVMSG
SPLPPHSVQTPNNYMPGLGGLGVPLSSSYTFAPSSHGQPPVTFNAVSQYQPMPQMHAPSI
PSGGQPALPSMNQNTALVLPIQHNGEQSSITAANVLATGIQPRPTEEALTEWKEHTSGNG
RRFYYNKRTKQSSWEKPFELMTPIERADASTDWKEFTSPDGRKYYFNKVTKQSKWEIPEE
LKLARARVEKPSIMETQSEVSANSHAPTSVLPSMGKAPSSADALSSTAQGAPSSPVPVKP
VAVAGNSQSQLASESSALRVMPSSMTTNADEVQTTESPVAGVPKNAEINATAVNTITAPM
SDSFSAHDKPSSEDDAPAQDKQEAEKDVVIDEKVNNVTLEEKSINQDPLLYADKLEAKNA
FKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIK
QKKTREEFKKMLEGSKELTASMRWSKVATLFENDERFKAVERERDRRDLIETYLQELEEK
ERAKAHEERKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDY
LHDLVKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVASGTLTAKTNWRDYHLKVKDLH
AYVAVASNASGSTPKDLFEDVSEELQKQYHEDKTWIKDVVKLKKVPLASNWTLQDMKVAI
IEDVNSPPISDVNLKMVFDELLERAREKEEKEAKKRKRLADDFLNLLQSIKDITASSKWE
SFKEIFEGSQEYSSIGEEAFCREMFEEYISQLKEQEKENERKRKEEKAKKEKEREERDWR
KAKHRSEKERGHERDKEHTRKEEADVEISDTTETQVCSDKKRSGSDNSSRKQRKRHQNAV
DDLDESEKDRSKSSHRHGSNDHKKSRRHGSTPESDSESRHKRHKRDHRNGSRRAGGNEDL
EDGEFGAEKKQAQQPPVNLRNQQGYAFQSMI
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggccaataaccctcaattctctggaatacagcctcttcagcctcctctggtgggccca
atggatcctcctcgaaatttgtttccaccaccaccgatgcctgttcaattccgacccatt
gttccagtgcagccacaacaattcattcctgtgagttctccacactttcagcctgttggc
cggggtgtcactgtgatgaatgcgggattgcctcctcaacccccacaacctcaatttcct
catccaatgcagcagttaccagctatacctaaccagccaagccatggtcctcctccacca
ccaccaccacaggcaattctattgccaaatgctcagccaaacaggcatgtcatgtctgga
tctccactgcctccacatagtgttcaaactccaaacaactatatgcctggtttaggtggc
ttgggagtgcctctatcttcatcgtatacttttgcaccatcttcacatggtcaaccaccc
gtaacctttaacgctgtatctcaatatcagcctatgcctcaaatgcatgcaccgtctatt
ccctctggaggacagccagcattaccatccatgaaccagaacactgcacttgttttgcct
atacagcacaatggtgaacagtcttcaattaccgctgccaatgttctggcaactggtatc
caacctaggccgactgaagaagccttgacagagtggaaagaacatacatctggtaatgga
aggaggttttattacaacaagaggacaaagcaatctagttgggagaagcctttcgagtta
atgacaccaattgagagggcagatgcatcaactgactggaaggaattcacaagtcctgat
ggacgaaaatattacttcaacaaagttacaaagcagtcaaaatgggaaatcccagaagaa
ttgaagttggcccgtgcacgagtagaaaagccatctatcatggaaacacaatcggaagtc
tctgctaattctcatgcccctacttctgttcttccatctatgggtaaggcaccatctagt
gccgatgctttgtcttctacagctcaaggggcaccatcaagtccagttcctgttaaacct
gttgctgttgctggtaactcgcaatctcagttagcttctgaatcatcagccctacgtgtt
atgccctcttccatgacgaccaatgcagatgaagttcagacaaccgagagtcctgttgct
ggtgttccaaaaaatgctgaaatcaatgctacagcagttaacacaataactgcaccaatg
agcgacagcttttctgctcatgataaacctagttcagaagatgatgctcctgcacaagat
aaacaggaagctgaaaaagatgttgtcatagatgaaaaggttaacaatgttacattggaa
gagaaatcaattaatcaggatcccttactttatgctgataagctggaggcaaaaaatgca
tttaaagcacttttggagtctgcaaatgttgggtctgagtggacctgggaccaggccatg
agagtaataattaatgataaaagatatggtgcattaaaaacacttggagagcggaagcaa
gcatttaatgagttcttgggtcagaagagaaaacaggaagctgaggaaaggaggattaaa
cagaaaaaaacacgggaagaattcaagaaaatgctagaagggtccaaagagctgacagca
tccatgagatggagtaaagtagcgactctgtttgaaaacgatgagcggtttaaagctgtt
gaacgagaaagagaccgtagagatctgattgaaacctacttgcaggaacttgaagaaaag
gaacgagcgaaggcacatgaggagcgcaagaggaacatcatggaatacaggcagtttttg
gaatcgtgcgaatttataaaggcaagcacccagtggcgaaaagtacaggatcggttagaa
gctgatgaaagatgttcacgccttgaaaaaattgatcgcttagaaatttttcaggattat
ttacatgatttggtgaaggaagaagaggagcaaaggaagatacagaaggaagaacaaaga
aaggcagagcgtaaaaatcgtgacgagttccgcaagctgcttgaagaacatgttgcttca
ggaactcttacagccaaaactaactggcgtgattatcacctaaaggttaaagatttgcat
gcatatgtggctgtcgcttcaaatgcctcaggttcaactccaaaagatttgtttgaagat
gtctctgaggagctacagaaacaatatcatgaggacaaaacttggataaaagatgttgta
aagttgaaaaaggttcctttggcatcaaactggacacttcaggatatgaaggttgctatt
atcgaggatgttaactctccacctatatcagatgtgaacctaaagatggtatttgatgag
ttgctggaaagagcaagggaaaaggaggagaaagaagccaagaagcgtaaacgtcttgca
gatgattttctcaatctactacagtctatcaaggatataactgcatcttcaaagtgggag
agcttcaaggaaatcttcgaaggaagccaagagtacagttccattggtgaagaagccttc
tgcagggagatgtttgaggaatatatatcccaactgaaagaacaggagaaggagaatgag
cggaaacgaaaggaggaaaaggcaaaaaaggaaaaagagagagaggaaagagattggagg
aaagctaagcatagaagcgaaaaggagaggggacatgaaagagacaaggagcacacaagg
aaggaagaagctgatgttgaaatctctgatacaacagaaactcaagtttgtagtgataag
aaaagatctgggagtgacaatagcagcaggaaacagaggaagaggcatcaaaatgctgtg
gatgatctggatgaaagtgagaaggatcggtccaagagttcccatagacatggcagcaat
gaccacaaaaaatcaagaaggcatggttccacccctgagtcagacagtgaaagcaggcac
aagagacacaagagagaccaccgtaatggttctcgtagggctggtggtaatgaggatctc
gaagatggggaatttggtgctgagaaaaagcaggcccaacaacctcctgtaaatctgcga
aaccagcaaggctatgcttttcaatcaatgatttaa
DBGET
integrated database retrieval system
