Populus trichocarpa (black cottonwood): 7478851
Help
Entry
7478851 CDS
T01077
Name
(RefSeq) exopolygalacturonase clone GBGE184
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Module
pop_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7478851
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
7478851
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
7478851
NCBI-ProteinID:
XP_002301489
UniProt:
B9GSC9
LinkDB
All DBs
Position
2:complement(16571142..16573457)
Genome browser
AA seq
413 aa
AA seq
DB search
MTIAGSILVLGLALLSCVADGALRHHIGLSDRRSLIDGSGAAVTVFDVTKHGAKADDKTD
NAEAFIQTWRAACDSGAPAKMVIPGGTFLTSPVVFQGPCKSTEPIVFEVQGNVKATTDLS
EYSSEQWILFEIIDGLTLNGGGTFDGQGSAVWKYNDCHQNKECQPLPSSIKLSKVKNAFV
HEISSVDSKYFHMHVTSCNSISIHNINLTAPANSPNTDGIHISHSDGVHVTSSKIGTGDD
CISIGQGSTNILISQVFCGPGHGLSVGSLGKYKNEEDVRGIVVTNCTLFNTTNGVRIKSY
AASDPSQALNITFKDITMDSVKNPIIIDQKYGSRNGAPSRVKISNVHYQNIKGTSTSDVA
VSFSCSSLVPCQGVELVDIDLAYIGQKANVPLSASCLNANIVKSGGKQNPGCN
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaccattgcaggaagcattcttgttttaggcttagctttgctctcttgcgtggccgat
ggtgcacttcgccaccatattggtctcagtgaccgtcgtagcctgattgatggtagtggt
gccgcggttacagtttttgatgtaacaaaacacggtgccaaggctgatgataagaccgat
aacgcagaggcatttatccaaacatggcgggcagcatgtgattcaggtgctccagctaag
atggttatccctggagggacatttttgacaagccctgtcgtatttcaagggccgtgcaaa
agcacagagcctatagtttttgaagtacagggaaacgtgaaagctacaactgatctcagt
gaatatagttcagaacaatggatcttatttgaaataattgatggtttaacattgaacggt
ggaggaacttttgatgggcaaggcagtgccgtctggaagtacaacgattgccatcaaaac
aaggaatgccagccacttcccagttccattaagttgagcaaagtaaagaatgcttttgtt
cacgagatcagctctgtcgatagcaaatatttccacatgcacgttacaagctgcaacagc
atttcgatccacaatatcaatttgactgctcctgctaatagcccaaatacagatggtatt
cacataagccattctgatggtgtccacgtaacaagcagcaagattggaacaggtgatgac
tgtatttccattggacaaggatccacaaatattctcatctctcaagtcttttgcggccct
ggacatggccttagtgttggaagccttggcaagtacaagaacgaggaggatgtgagagga
attgttgtgactaactgcacattgtttaacaccaccaatggtgtgagaatcaaatcatat
gctgcatctgaccctagccaagctttaaatatcacttttaaagatatcactatggatagt
gtgaaaaatcccattatcattgatcagaagtatggttcccgcaatggcgcgccatcacga
gtgaaaattagcaatgttcattaccagaacatcaaaggcacctcaacttccgatgttgct
gtcagtttttcgtgcagttcattggttccttgtcaaggagtagagcttgtggacatcgat
ttggcctatatcggccagaaagcaaacgtgcctctctcagcttcatgtttgaatgcaaat
attgttaaatcgggcggcaaacagaacccaggatgtaattga
DBGET
integrated database retrieval system
