Populus trichocarpa (black cottonwood): 7479050
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Entry
7479050 CDS
T01077
Name
(RefSeq) starch synthase 3, chloroplastic/amyloplastic
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00500
Starch and sucrose metabolism
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
7479050
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pop01003
]
7479050
Enzymes [BR:
pop01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
7479050
Glycosyltransferases [BR:
pop01003
]
Polysaccharide
Storage polysaccharide
7479050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_5
CBM53
Glyco_transf_4
Glyco_trans_1_4
Glycos_transf_1
Glyco_trans_4_4
DUF6799
Peptidase_M2
DUF3592
Motif
Other DBs
NCBI-GeneID:
7479050
NCBI-ProteinID:
XP_024455405
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All DBs
Position
4:complement(882032..892068)
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AA seq
1163 aa
AA seq
DB search
MEVALLVQSPLSCSGRGVFSERNGLKIKPFLVGSFPHVRSGQLSSLNSWRKEFPASGVSF
RIAATADFSKRRQRKMSNARPRGSSPKGFTPKTPVGTSTQKRDLENNGEKEGSVTPKSSE
IAEANKQTLETQVEEDEELAIEHSGEKKVDEEKIGEEVSLMSKKVAVANGNQVVKNGSIS
RVGKDVTLSEDKIALEGSQNDDLKNDGIVKEKSISIDARKTEDDSLQIKLKLEMEEKLRK
EETDRLAEEKLRKQEIERLVEENFSKGNKLFVYPQMVKPDEDIEVFLNRSLSTLSDEPDI
LIMGAFNDWRWKSFTFRLSKTHLNGDWWSCQVHVPKEAYKMDFVFFNGQDVYDNNDRKDF
YILVEGGMDAFAFDDFLLEEKRRELEKLAKEQAVKERLAEEQRRREAEKAASEADRAQAR
AEIEKRRRTLQELMKKAARSFNNVCHVEPSEFKGEDTIKLYYNKSSGPLAHANDLWVHGG
HNNWKDGLSIVERLVSSDKKDGDWWYANVVVPDRAFVLDWVFADGPPQNATVYDNNHRQD
FHAIVPNGIPEELYWVEEEHQIYRKLQEKRRLREDAIRAKAEKTARIKAETKEQTLKRFL
LSQKHIVYTEPLDVQAGSTVTVFYNPANTILNGKPEVWFRGSFNRWTHRKGPLPPQKMLP
ADNGSHVKATVKVPLDAYMMDFVFSEKEDGGIFDNREGMDYHIPVSGGIAKEPPMHIVHI
AVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCMKISHVKDLHYQRSYSWGGT
EIKVWFGKVEGLSVYFLEPQNGMFWAGCVYGCKNDGERFGFFCHAALEFLQQSGFHPDII
HCHDWSSAPVAWLFKDHYMHYGLSKSRVVFTIHNLEFGANNIGKAMAYSDKATTVSPTYS
REISGNPLIASHLHKFHGILNGIDPDIWDPYNDTYIPVPYTSENVVEGKRTAKEALQQRL
GLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRVQNDFVNLANH
LHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIAVVRKTGG
LFDTVFDVDHDKERAKAQGLEPNGFNFDGADPAGVDYALNRAISAWYDGRDWFNSMCKKV
MEQDWSWNKPALDYLELYHSARK
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggctttgctagtacaaagtccattgagttgtagtggaaggggtgtttttagt
gaaagaaatggtttaaagattaaaccttttcttgttgggtctttccctcatgttagaagt
ggacaactttcaagtcttaattcatggaggaaggagtttccagcaagtggagtttcattt
cgaatagctgcaactgctgatttttctaagaggagacagagaaaaatgtcaaatgctagg
cctagaggctcttctccgaagggattcacgccgaaaacacctgttggaacaagcacccag
aagagagatttagaaaacaatggagagaaagagggttcagttacaccaaaatctagtgag
attgcagaggccaacaagcaaacactagaaacacaggttgaggaggatgaagaactggca
attgaacattctggggagaaaaaagtcgacgaagaaaagataggagaggaagtatctttg
atgagtaaaaaggtggctgttgctaatggtaatcaagtggtcaaaaatggaagtatcagt
agagttggtaaggatgtgaccctgtcagaggataaaattgctttagagggaagccaaaat
gatgacttgaagaatgatggtattgtgaaagagaagagcatttcaattgatgcgagaaag
actgaagatgattctctacaaataaaattgaagttggaaatggaagaaaaattgcgtaaa
gaagaaactgataggcttgctgaagaaaaattgcgtaagcaagaaattgagaggcttgtt
gaggaaaacttctctaagggtaacaaattgtttgtctatccgcagatggtgaaacccgat
gaagacatagaagtgttccttaatagaagtctatcaaccttgagtgacgaaccagatatt
ttgattatgggagcattcaatgactggagatggaaatcttttacctttaggttgagcaag
acccatctcaatggggattggtggtcttgccaggttcatgttccaaaagaagcatataag
atggactttgtgttcttcaatgggcaagatgtctatgacaataatgacaggaaggatttc
tacattcttgttgaaggtggaatggatgcatttgcatttgatgatttcttgcttgaggaa
aaacgtcgggaactggagaaacttgcaaaggagcaagctgtgaaggaaagattagcagaa
gagcagaggcgaagagaagcagagaaggctgcaagtgaagctgatagagcacaggcaagg
gcagaaattgaaaaaaggagaagaacattgcaagaactgatgaaaaaggctgcaaggtcc
ttcaataatgtttgccacgtagaacctagtgagttcaaaggtgaggacacgatcaagtta
tattataacaaaagctcaggtcctctagcccatgctaatgacctttgggttcatgggggg
cataataattggaaggatggattgtccattgttgagagacttgtcagctctgacaaaaag
gatggcgattggtggtatgctaatgttgttgtacctgatcgagcctttgtcctggattgg
gtctttgctgatggtccacctcagaatgccactgtgtatgataacaatcatcgccaagat
ttccatgctattgtcccaaatggtattcctgaagaattgtattgggttgaggaagaacac
caaatatataggaaactacaggaaaagaggaggttaagagaggacgctatacgtgccaag
gctgagaaaacagcacgtattaaagctgaaacaaaggaacaaactttgaaaaggtttctg
ctgtcacaaaagcatatagtttatactgagcctcttgatgttcaggctggaagcaccgtg
acagttttctataatcctgctaacaccattctgaatggtaaacctgaagtttggttcaga
ggttcattcaaccgttggacccaccgtaagggtccattgccacctcagaaaatgttgcct
gcagataatggctctcacgtcaaagccactgtcaaggttccattggatgcctacatgatg
gattttgtattctctgagaaggaagatggtggaatttttgacaatagagaaggcatggat
tatcacataccagtgtctggaggaattgcaaaagaaccaccgatgcacattgtgcatatt
gctgttgaaatggccccaatcgcgaaggttggtgggcttggtgatgttgtgactagtctc
tcccgtgcagttcaagatttaaaccacagtgtggacatcattcttccaaagtatgactgt
atgaagattagccatgtgaaagatttgcactaccagagaagctattcctggggtgggact
gaaataaaagtatggtttgggaaggtggaaggcctttctgtctatttcttggagcctcaa
aatggaatgttttgggcaggttgcgtatatggctgcaagaatgatggggagagatttggt
ttcttttgccatgcagcccttgaatttttacaacaaagtggatttcatcctgatattatc
cattgccatgattggtctagtgctccagttgcatggttgtttaaggaccattatatgcat
tatggtcttagtaaatcccgggtagtcttcaccattcataatcttgaatttggggcaaac
aacattgggaaagctatggcatattctgacaaggctacaactgtatctcccacatattca
agggagatttcaggaaatcctttaattgcttctcatctccacaagttccatggcatccta
aatggaattgaccctgatatatgggacccttataatgatacatacattcctgtaccttat
acttccgagaatgttgttgaaggaaaaagaactgccaaggaggctttgcaacaaaggctt
ggtttgaaaaaggctgatcttcctctggtaggaataattactcgcttgacacatcaaaag
ggaatccatctcatcaagcatgcaatttggcgcaccttagagcgcggtgggcaggttgta
ctgcttggttcagctccagatccccgtgtccagaatgattttgtgaatttggccaaccac
ttgcattctagtcaccatgaccgtgctcgcctttgtttgacttatgatgagcctctttcg
cacttgatatatgcgggtgctgatttcattctagtcccatctatttttgagccttgtgga
ctgacccagcttactgctatgagatatggttcaatagctgttgttcgaaaaactggaggg
cttttcgacactgtgtttgatgttgaccatgacaaagaaagagccaaagcacaaggtctt
gaaccaaatggatttaactttgatggagctgaccctgctggtgttgattatgctctaaat
agggcaatctctgcctggtacgacggtcgggattggtttaactcgatgtgtaaaaaggtg
atggagcaagactggtcttggaataagcctgctctcgattacttggagctttaccattca
gcacgcaagtga
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integrated database retrieval system
