Populus trichocarpa (black cottonwood): 7479082
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Entry
7479082 CDS
T01077
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7479082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7479082
03019 Messenger RNA biogenesis [BR:
pop03019
]
7479082
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7479082
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
7479082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
7479082
NCBI-ProteinID:
XP_024455334
LinkDB
All DBs
Position
4:1459401..1466476
Genome browser
AA seq
1052 aa
AA seq
DB search
MQPTKLLNPKAATKAAAAAAVTTTMPNELLAQKPSASSVLDKFRSLLKQRQGSAVEDDGG
GDGASLRLEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV
DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP
SSVLHKIETQLHFSPQVNDQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADNTGWS
IQTYKAKNVIQSLQNVQHAKGTSSNLKIYGKKPTVGYDEYESDQAEAISSQVGVGRTSLT
LGSNKLQPSSTSRLARRLSPSTTGAERPLSSEIDDFAVGNSPRRFVEALSPSHPLFDYGH
SRAIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYGDDRGKRITS
SKPLHIEQLAVNGVHNKVASRSWQNTEEEEFDWEDMSPTLSERGRSNDFLPSSIPPFGSV
VPRPAFGRLSAIHAESDIRSNRSSLAPMAFVDGSSNIAEEAVSILGSGRGSTSKIPGFRT
ERNQISGSRHHQEAWNFPPHIHQSAHLLNSKGRGRDFQMPLSGSGVSSLGGENYSPLAEK
LPDIDAQLNRPPAIASRWGSNIDSTSSGTWSSVAPPSSGVWPPVNARKSLPPPVHRIFPP
PEQSRSQFDPINASSTVINQVLQKGSVMPEQPFNSFENKDYNSMKPTPMSNQHAALNQQN
QAHVNPFQPQQLPSHEARENFHPSGVTSMPPRPLAPPLNHGYNTHGHSTAISMVPSNALP
AVQLPLPVNNIPNMLHSQVGVRPPLPPGPPPQTMPFPQNASSGVPGQPSGSAFSGLFNSL
MAQGLISLTKQTPVQDSVGLEFNADLLKLRYESAISALYGDLPRQCTTCGLRFKCQEEHS
THMDWHVTKNRMSKNRKQKSSRNWFVSASMWLSGAEALGTDAAPGFLPTETTVEKKDDDE
MAVPADEEQSTCALCGEPFDDFYSDETEEWMYRGAVYLNSSNGSTAGMDRSQLGPIVHAK
CRSDSSVVPPEDFGHDEGGNSEEGNQRKRMRS
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccacaaaactcctaaaccctaaagccgccaccaaggcggctgctgcggcagcc
gttaccaccaccatgccaaatgaactgctggcacagaaaccatcagcatcgtcagttctt
gacaagttccggtctttattgaagcaacgacaaggatcagcagtggaggacgatggtggt
ggtgacggggcgagtttgcgtctggaggatgtggtggagatttatgagacggttttgaat
gaattgacgtttaattcaaaacctataattacagatttgactattattgctggagaacag
cgggagcatggtgagggtattgctgatgttctctgtgcccgcattgttgaggcccctgta
gatcaaaagctgccttcattatatcttctagatagcattgtcaagaatattggccgtgaa
tacattaggcacttctcgtcccgtttgcctgaggttttttgcgaggcatacagacaagtt
gaccctagcttatatccttcaatgcgccacctttttggcacatggtcctcagtgtttcca
tcttctgtacttcacaagattgagactcaacttcatttttctccacaagttaatgatcag
tcatcaagcttgacttcctttagagcttctgaatcacccagaccacctcatggcatacat
gtgaacccaaaatacttgcgtcagctggatcattcaactgcagataatacagggtggtca
atacaaacatacaaagctaaaaatgtaattcaatctttgcagaatgttcagcacgctaag
ggaacttcttcaaatctgaaaatatatggtaaaaaacctactgttggatatgatgaatat
gaaagtgatcaagcagaggccatatcttcacaggttggagtgggccgtacatctctcact
cttggatctaataagctgcaaccatcttcaacttccaggcttgcaagacgcttgtcgcct
tcaacaactggagccgagaggcctttatcttcagaaattgatgactttgcagtagggaat
tctcctcgaaggtttgttgaggcgctgtccccatctcatcctctatttgattatggacac
agcagagccattgtcagagatgaggaggcaaatgaattaagaagaaataattattctgat
gataaccataaccgatttgaaccttctgctagatataggcttagcaatggacttgaacat
caaggacccagagctttaatagatgcatatggggatgatagggggaaaagaattacaagt
agtaaacctctgcatattgaacagttagccgtaaatggcgtgcacaataaggtagcttca
agatcatggcagaatactgaagaagaggaatttgattgggaagatatgagccctactttg
tcagagcgtggtaggagtaatgatttcttgccatcatctattccaccttttggaagtgtt
gttccaaggcctgcctttggaaggctaagtgctatccatgcggaatctgatatcaggagc
aatcgatctagtctggctccaatggcatttgtggatggctcctctaatattgctgaagaa
gcagtctcgattctgggttctggccgtggatcaacaagcaagattcctggattccgaact
gagagaaatcagatctcgggttcccgtcatcatcaagaagcttggaattttccacctcac
atccatcagtcagcacatctcctgaattctaaaggaagaggacgggatttccagatgccc
ttatctggaagtggtgtgtcttctttgggtggtgagaattactctccacttgctgaaaaa
cttccagatattgatgcacagcttaataggcctcctgccattgcatcaagatggggctct
aatattgactctactagttcagggacctggtcaagtgttgcgccaccatcatcaggggtc
tggcctccagtaaatgcacgaaagtctctgccacctcctgtgcatcgtatttttcctcca
ccagagcagagtagaagtcagtttgatccaataaatgccagcagcactgtcataaatcag
gttttacaaaagggttcagttatgcctgaacaaccatttaatagttttgagaacaaagat
tacaattcgatgaagccaacaccaatgtctaatcagcatgctgctttgaatcagcaaaac
caggcacatgtaaatccttttcagccacaacaacttccatctcatgaagcccgagagaat
tttcatccatctggggtaacttcaatgccacctcgtcccctggcaccaccactgaatcat
ggatacaacactcacgggcatagcactgccattagtatggttccttcaaatgcattacct
gctgtacaactgcctttaccagtcaacaatattccaaatatgttgcattcacaggtgggg
gttcggccacctttgccacctggtcctcctccccaaacaatgcctttccctcagaatgct
agttcaggtgtccccggccaaccatctggcagtgcattttcgggtttgtttaactctctc
atggcacaaggattgatctcattgacaaaacaaactcctgtgcaggactctgtgggactt
gagttcaatgctgaccttctcaagctgcgctatgaatctgcaatcagtgcattgtatggt
gatctgccaagacaatgcacaacatgtggccttcggttcaagtgtcaagaagagcacagt
actcacatggattggcatgttacgaaaaaccggatgtctaagaaccggaagcagaaatct
tctcgcaactggtttgtaagtgcaagtatgtggctcagtggtgcagaggcattgggaact
gatgcagctcctggttttttgcccactgagaccactgtggagaagaaggacgatgatgaa
atggctgttcctgctgacgaagagcagagtacatgtgcattatgtggagagccttttgat
gatttctacagtgatgaaactgaggaatggatgtatagaggagctgtctacctgaattca
tctaatggatcaacagcaggcatggataggtctcagttaggtcctatagtacatgctaaa
tgcagatccgattctagtgtggttccccctgaagattttggacatgatgaagggggaaat
tctgaagagggtaatcaaagaaaacgaatgcggagctaa
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integrated database retrieval system
