KEGG   Populus trichocarpa (black cottonwood): 7479128
Entry
7479128           CDS       T01077                                 
Name
(RefSeq) U3 snoRNP-associated protein-like EMB2271
  KO
K14793  ribosomal RNA-processing protein 9
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pop03009]
    7479128
Ribosome biogenesis [BR:pop03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    7479128
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_EML EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_SPT8 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 NBCH_WD40 Beta-prop_VPS8 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_ACSF4 Beta-prop_WDR19_1st Nop14
Other DBs
NCBI-GeneID: 7479128
NCBI-ProteinID: XP_052308775
LinkDB
Position
5:3852540..3856301
AA seq 502 aa
MNKNPRKRGGPPGRNERGGSKFSMNRDPFFSNNKRRKKGEDEDIESEEEEELDGGMLNGG
GESGEDEEDEELIPEETAEEKRQRIAKAVVENLRAREKELEGEEDEEGDREFEKEGERDS
SVAKKLMQQQLEESGRLRRAIASRVQKPESVDGFEVLVKHRQSVTAVCLSDDDSKGFSAS
KDGTILHWDVDSGKAEKYQWPNDEILRSHGAKNPEGRATKHSRNVLALAVSTDGRYLASG
GLDRHVHLWDTRTREHIQAFPGHKGPVSCLTFRKGSSELFSGSYDRSIKIWNVEDRAYMN
TLFGHQSELLTIDCLWQERVLAVGRDRSMQLFKVHDESRLIFRSSTSSLECCCFIDNSEF
VSGSDDGNIELWSVQKKKPVYIVKNAHTSSTDVNNGELKDNGRNYNGHVASSWVSSVGVC
RGSDLAASGAGNGSVRLWAVEGAGKGIRPLYDLPLTGFVNSLAFAKSGKFLLAGVGQEPR
LGRWGHNSAARNGVAIQQLKLL
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgaacaagaatccaaggaagagaggaggccccccgggaagaaacgagagggggggcagc
aagttttctatgaatagagatccctttttcagcaacaataaaaggcgtaagaagggtgag
gatgaagacatcgaatccgaggaggaggaggagttggacggaggaatgctaaatggtgga
ggagaatcaggggaggatgaagaggatgaggaattaataccggaggagacggcggaagag
aagaggcagcggattgcgaaagcagtggtagagaatcttagagcgagagagaaggagctt
gagggtgaggaggatgaagagggggatagagagtttgagaaggaaggtgagagggattct
tctgtggctaagaaattgatgcagcaacagcttgaagaaagtggtcgcttgagaagagcc
attgcttctagggttcaaaagccagagagtgtcgatgggtttgaagtccttgtgaagcat
cggcaatctgttactgctgtatgcctttctgatgatgactcgaagggcttttctgcttcc
aaagatggaacaattttgcattgggatgtagacagtggaaaagctgaaaaataccaatgg
cctaacgatgaaatactaagatcccatggggccaagaatccagaaggtcgagcaactaag
catagcaggaatgttttggcattggctgttagtactgatggtcggtatttggccagtgga
ggcttggatcggcatgttcatttgtgggacactcgtacacgagaacatattcaggctttc
ccaggtcataaaggtcctgtctcatgtttgacgtttaggaaagggagttcagaacttttt
tctggttcatatgatcgatcaatcaagatatggaatgtagaagatagagcttacatgaac
acattgtttggtcaccaaagtgaattgttaacaattgattgtttgtggcaagaacgagtg
cttgctgttggacgtgatcggagcatgcaattgtttaaggtccatgatgagtcaaggctg
atatttcgttcttctacgtcatctttggagtgttgctgttttattgacaacagcgaattt
gtgtctggatcagatgatggaaatattgagctttggagtgtacaaaagaagaagcctgtg
tacattgttaagaatgctcatacttcgtcgactgatgtcaataatggtgaactgaaggat
aatggaagaaattacaatggtcatgttgcgtcttcctgggtaagttcagtcggtgtgtgt
agaggcagcgatcttgctgcatcaggggctgggaatggttctgtccgcttatgggctgta
gaaggtgctggcaaaggcatccggcccttgtacgatcttccattgactgggtttgtaaat
tctctggcctttgcaaaatctggaaagttccttctcgctggggttggacaggaacctcgc
ctaggaagatggggacacaattcagctgctcgaaacggagttgcaatccagcagttgaag
cttttgtag

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