Populus trichocarpa (black cottonwood): 7479128
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Entry
7479128 CDS
T01077
Name
(RefSeq) U3 snoRNP-associated protein-like EMB2271
KO
K14793
ribosomal RNA-processing protein 9
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7479128
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Other 90S particles
7479128
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_EML
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_like
Motif
Other DBs
NCBI-GeneID:
7479128
NCBI-ProteinID:
XP_052308775
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Position
5:3852540..3856301
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AA seq
502 aa
AA seq
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MNKNPRKRGGPPGRNERGGSKFSMNRDPFFSNNKRRKKGEDEDIESEEEEELDGGMLNGG
GESGEDEEDEELIPEETAEEKRQRIAKAVVENLRAREKELEGEEDEEGDREFEKEGERDS
SVAKKLMQQQLEESGRLRRAIASRVQKPESVDGFEVLVKHRQSVTAVCLSDDDSKGFSAS
KDGTILHWDVDSGKAEKYQWPNDEILRSHGAKNPEGRATKHSRNVLALAVSTDGRYLASG
GLDRHVHLWDTRTREHIQAFPGHKGPVSCLTFRKGSSELFSGSYDRSIKIWNVEDRAYMN
TLFGHQSELLTIDCLWQERVLAVGRDRSMQLFKVHDESRLIFRSSTSSLECCCFIDNSEF
VSGSDDGNIELWSVQKKKPVYIVKNAHTSSTDVNNGELKDNGRNYNGHVASSWVSSVGVC
RGSDLAASGAGNGSVRLWAVEGAGKGIRPLYDLPLTGFVNSLAFAKSGKFLLAGVGQEPR
LGRWGHNSAARNGVAIQQLKLL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaatccaaggaagagaggaggccccccgggaagaaacgagagggggggcagc
aagttttctatgaatagagatccctttttcagcaacaataaaaggcgtaagaagggtgag
gatgaagacatcgaatccgaggaggaggaggagttggacggaggaatgctaaatggtgga
ggagaatcaggggaggatgaagaggatgaggaattaataccggaggagacggcggaagag
aagaggcagcggattgcgaaagcagtggtagagaatcttagagcgagagagaaggagctt
gagggtgaggaggatgaagagggggatagagagtttgagaaggaaggtgagagggattct
tctgtggctaagaaattgatgcagcaacagcttgaagaaagtggtcgcttgagaagagcc
attgcttctagggttcaaaagccagagagtgtcgatgggtttgaagtccttgtgaagcat
cggcaatctgttactgctgtatgcctttctgatgatgactcgaagggcttttctgcttcc
aaagatggaacaattttgcattgggatgtagacagtggaaaagctgaaaaataccaatgg
cctaacgatgaaatactaagatcccatggggccaagaatccagaaggtcgagcaactaag
catagcaggaatgttttggcattggctgttagtactgatggtcggtatttggccagtgga
ggcttggatcggcatgttcatttgtgggacactcgtacacgagaacatattcaggctttc
ccaggtcataaaggtcctgtctcatgtttgacgtttaggaaagggagttcagaacttttt
tctggttcatatgatcgatcaatcaagatatggaatgtagaagatagagcttacatgaac
acattgtttggtcaccaaagtgaattgttaacaattgattgtttgtggcaagaacgagtg
cttgctgttggacgtgatcggagcatgcaattgtttaaggtccatgatgagtcaaggctg
atatttcgttcttctacgtcatctttggagtgttgctgttttattgacaacagcgaattt
gtgtctggatcagatgatggaaatattgagctttggagtgtacaaaagaagaagcctgtg
tacattgttaagaatgctcatacttcgtcgactgatgtcaataatggtgaactgaaggat
aatggaagaaattacaatggtcatgttgcgtcttcctgggtaagttcagtcggtgtgtgt
agaggcagcgatcttgctgcatcaggggctgggaatggttctgtccgcttatgggctgta
gaaggtgctggcaaaggcatccggcccttgtacgatcttccattgactgggtttgtaaat
tctctggcctttgcaaaatctggaaagttccttctcgctggggttggacaggaacctcgc
ctaggaagatggggacacaattcagctgctcgaaacggagttgcaatccagcagttgaag
cttttgtag
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