Populus trichocarpa (black cottonwood): 7479194
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Entry
7479194 CDS
T01077
Name
(RefSeq) structural maintenance of chromosomes protein 2-1 isoform X1
KO
K06674
structural maintenance of chromosome 2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7479194
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
7479194
Condensin II
7479194
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
PspA_IM30
KIF9
AAA_29
BST2
DUF2393
Motif
Other DBs
NCBI-GeneID:
7479194
NCBI-ProteinID:
XP_002304405
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All DBs
Position
3:complement(13122386..13130752)
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AA seq
1176 aa
AA seq
DB search
MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS
NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK
LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKES
ALKTLEKKQSKVDEINKLLDQEILPALEKLRKERMQYMQWANGNSELDRLKRFCIAYDYV
QAVKIRDSAVVEVEHMKGKIAEIDTSAEQMLVEIQQKETEISKLAAEKEASMGGEVKTLS
ENVDVLAQDLVREVSVLNNKEDTLRSECESAEKIVHSIEDLKQSVEERAAAVKKSEEGAA
DLKRRVGELSNSLENYEKEYQGVLAGKSSGSEEKCLEDQLGEAKYAVGNAETELKQLKTK
ISHCEKELKEKTHQLMSKNEEAVAVENELSARRKDVENAKSALESLSYKEGQMEALQKDC
ASELKLVQKLKDEIRDLSAQLSNVQFIYRDPVRNFDRSKVKGVVAKLIKVNDSSTMTALE
VTAGGKLFNVVVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPIRVQQAAVRLVGKEN
AELALTLVGYDEELKTAMEYVFGSTFVCKNIDAAKEVAFSREIRTPSVTLEGDIFQPSGL
LTGGSRKGGGDLLRQLHELAEAESNLTLHQRRLSEIEAKITELLPVHKKFADLKKQLELK
LYDLSLFQGRAEQNEHHKLGEVVKKIEQELEEAKSAVKEKQILYNECVNTVSMLEKSIKE
HDNNREGKLKDLEKQIKATKAQMQSVSKDLKGHENERERLIMEQEAVMKEHASLESQLGA
LRAQISCLNLELEEQKAKVASTRNNHDQVQSELNAIRLKMKERDSQISSILKEQQKLQHK
LSETKLDRKKLENEVKRMEMEQKDCSMKVDKLIEKHAWIASEKQLFGRSGTDYDFLSLNP
SKAKEELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKINKVIEEL
DEKKKETLKVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGGVWKQSL
SELSGGQRSLLALSIILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIV
VSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQNL
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtatataaaggagatatgtttagaggggttcaaatcttacgcaacaagaacagtagta
caaggattcgacccctttttcaatgcaattacggggctaaatgggtctggcaagtcgaat
attctggattcaatttgttttgttttgggtataactaatttgcagcaagttagggcatcc
aatttgcaggagttagtgtacaagcaaggacaggcagggattactaaagctacagtgtca
attgtgtttgataattctgacaggaataggagtcctcttgggtatgaagatcattcagag
attacagttactagacagattgtggtcggtggaaggaacaagtatctgatcaatggaaag
ctggcccagcctagtcaagtccaaaacctttttcattcagtgcagctgaatgttaacaat
ccacattttctcattatgcaaggacgcattactaaggtcttgaacatgaaacctccagag
atcttatcaatgcttgaagaggctgctgggacaagaatgtacgagacaaaaaaagagtct
gcgttgaaaactctagagaagaagcagagcaaggtggatgaaattaataagcttctcgac
caggagatactgccagctttggagaagttgaggaaggagaggatgcaatatatgcaatgg
gccaacggaaattctgaattagatcgactcaaaaggttttgcattgcttatgattatgtt
caagcagtgaaaattagagacagcgccgttgttgaggtggaacatatgaagggaaaaatt
gctgagatcgacactagtgcagaacagatgctggtggaaatacagcaaaaggagacggaa
atatcaaaattggctgctgaaaaggaagccagtatgggcggggaagtaaaaactctgtca
gagaacgtagatgtgcttgctcaagatcttgtgcgagaggtatcggttttgaataataaa
gaggatactttaaggagtgaatgtgagagtgctgaaaagattgttcacagtattgaagac
ttaaagcagtctgttgaggagagggctgctgcagttaaaaagtctgaggaaggagcagct
gatctcaaaaggagagttggagaactttccaatagtttggaaaactatgagaaggaatac
caaggtgtgctagctgggaagagcagtggtagtgaggagaaatgccttgaagatcaactg
ggtgaagcaaagtatgctgttggaaatgctgaaacagagttgaaacagttgaaaacaaaa
attagccattgtgagaaagagctgaaagagaaaacgcatcagttaatgtcaaagaatgaa
gaagctgttgctgtagagaatgagcttagtgctagaaggaaagatgtcgaaaatgctaaa
tcagcgctggaatctctttcatataaggaaggccagatggaagctttacagaaggattgt
gcatccgaattgaaactagtgcagaagttgaaagatgaaatacgagacctttcggcgcag
ctatcaaatgttcaattcatataccgtgatcccgtgagaaactttgataggtcgaaagta
aaaggcgtggtagctaaactaattaaagtaaatgacagctccacaatgactgccctagag
gttactgcaggtggaaagttatttaatgttgttgtggacactgagagcactggaaagcaa
cttcttcaaaatggtgatctccgtagaagagtgacaattatccccttaaacaaaattcaa
tcccatactgtacccattagagttcagcaggctgctgttagattggttggcaaggagaat
gctgaactggcacttactttggttggctacgatgaggaattgaagactgctatggaatat
gtttttggttcaacatttgtttgcaaaaacattgacgctgcaaaggaggttgcttttagt
cgagaaatccgcactcctagtgtcactcttgaaggcgatatcttccagccaagtggtctt
ttaactggtggaagtcgcaagggtggtggcgatctgttaaggcaactccatgaattggca
gaggctgaatcaaatctcacactacatcagagaaggttatctgaaatagaagcaaagatt
acagagctcttgccggtccataaaaagtttgcggaccttaaaaagcagttagagcttaag
ctgtatgatctttcattatttcagggcagggctgagcaaaacgagcatcataagcttgga
gaagtagtaaagaagattgaacaagagcttgaagaagcaaagtctgcagtcaaagaaaaa
caaattttgtacaatgagtgtgttaatacagtgtcaatgcttgaaaaatctatcaaagag
cacgataataatcgagaaggcaagcttaaagacttggagaaacaaattaaggctacaaaa
gcacaaatgcagtcagtttcaaaggacctcaaggggcatgaaaatgaaagggagagactt
atcatggaacaggaagcagtcatgaaggaacatgcatctttggagagtcaattaggtgct
ttgagagcacaaatcagctgtcttaatttggaattagaagaacaaaaggccaaggttgct
tccacgcgcaataatcatgatcaggttcaatctgagctcaatgcaatccgtctaaagatg
aaggagcgtgattcccaaattagtagcattctcaaggagcagcaaaaacttcaacataaa
ctgagtgagactaagcttgacaggaagaagttggagaatgaggtgaagagaatggaaatg
gagcagaaagattgctctatgaaggtggacaaattgatagagaagcatgcctggattgct
tctgagaagcagctatttgggagaagtgggactgattatgattttctgtcactcaatcct
agtaaagcaaaggaggaacttgagaaattgcaagcagagcaatcagggctcgagaaaagg
gtgaacaagaaagttatggcaatgtttgaaaaagcagaagacgagtacaacgatttgatg
tcaaagaagaacatcatagagaatgacaagtctaaaataaataaagtgattgaagagcta
gacgagaagaagaaggagactctcaaagttacttgggttaaagtgaataatgactttgga
tctatcttttccaccctattgccgggcaccatggcaaagctagaacctcccgaaggttgc
agtttcctagatggtcttgaggttcgtgttgcttttggaggtgtctggaaacaatcgctg
tctgaattaagtggaggtcaacgctctctgcttgctttatctataatcttggcattactt
ctcttcaagccagctccactttatattctagatgaggtcgatgcggctcttgacttaagc
cacacacagaacatagggagaatgatcaaagctcacttcccacactcccagtttatcgtg
gtttcactaaaagaaggcatgttcaacaatgctaatgttcttttccggacaaaatttgtg
gatggtgtttccactgtacagaggactgttgccgctaagcagaacttgtga
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