Populus trichocarpa (black cottonwood): 7479228
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Entry
7479228 CDS
T01077
Name
(RefSeq) cullin-1
KO
K03347
cullin 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7479228
04120 Ubiquitin mediated proteolysis
7479228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7479228
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Cullin
7479228
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
DUF3232
DUF5903
Motif
Other DBs
NCBI-GeneID:
7479228
NCBI-ProteinID:
XP_024452514
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Position
3:13715474..13722531
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AA seq
738 aa
AA seq
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MSKDRKTTELEEGWEYMQNGISKLKGILDGSLEQFSSEEYMMLYTTIYNMCTQKPPNDYS
QQLYDKYKEAFQVYINSTVLPSIREKHDEFMLRELVKRWVNHKIMVRWLSRFFNYLDRYF
IARRSLPPLNEVGLTCFRDLVYQEVHSQAKDAVLDVIGKERDGEQIDRALLKNVLDIYVE
IGMSQMDHYADDFEAHMLQGTGAYYSVKAANWIREDSCPDYMIKAEECLKRERDRVSHYL
HSSSEIKLVEKVQHELLVVNANQLLEKEHSGVRALLRDDKVEDLSRMFRLYHKVTRGLEP
VSNVFKQHITAEGTALIQQAEDAASSQAANGGVQEQVLIRKIIELHDKYMTYVTACFQNH
TLFHKAMKEAFEIFCNKTVAGSSSAELLATFCDTILRKGGSEKLSDEAIEETLEKVVKLL
AFISDKDLFAEFYRKKLARRLLFDRSANDEHERSILSKLKQQCGGQFTSKMEGMVTDLQL
AKEHQSSFDEYLANNPSTRPGIDLQVNVLTTGYWPTYKSSDINLPAEMARGVEVFKEFYD
LKSKHRKLTWIYSLGSCHINAKFDQKTIELVVTTYQACLLMLFNTSDKLSYSEIMTQSNL
SDDDLPRLLHSLSCGKYKILSKEPNTKTVNQNDYFEFNHKFNDRMRRIKVPLPLVDERKK
VVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVLECVEQLNLMFKPDIKAIKKRIEDLIS
RDYLERDKENPNMFKYLA
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggatcgcaagactaccgaacttgaggagggatgggaatatatgcagaatggg
atctcaaagctgaaggggatcctggatggatcactagagcaattcagctctgaagaatat
atgatgctttacacaactatctacaatatgtgtactcagaagccaccaaatgactattct
caacagctttatgacaagtataaggaagcttttcaagtatatattaactccacggtatta
ccatcaataagggagaaacatgatgagtttatgctgagggagcttgtaaaaagatgggtt
aatcataaaattatggttaggtggttgtcacgcttcttcaattatcttgaccgttacttc
attgctcggaggtcacttccaccacttaatgaagttggactgacttgcttccgtgatctg
gtttatcaggaagtgcatagtcaagccaaggatgctgtgcttgatgtgattggtaaagaa
cgtgatggggaacagatagacagagcactgctaaagaatgttttagatatatatgttgag
attggaatgtcacaaatggatcattatgcagatgattttgaagcacacatgcttcaaggt
actggtgcttactattctgttaaagcagcaaactggattcgagaggattcttgtccagat
tacatgataaaggctgaggaatgcttgaagagagagagagatagagtttctcactacttg
cattcaagcagtgagataaaattagtagagaaagtgcaacatgagttattggtggtcaat
gcaaatcaactgctagagaaggaacattctggagttcgtgcattgctcagagatgacaag
gtggaagatctatccaggatgtttaggctttatcataaggttacccgtggcttggaacct
gtttctaatgtattcaagcagcatattactgctgaaggaacagccttgatccagcaggca
gaagacgctgcgagtagccaggctgcaaatggtggtgttcaggaacaagttctcattcga
aagataattgagctgcatgataaatacatgacttatgtgactgcttgttttcaaaaccac
acgttgtttcacaaggccatgaaagaggcttttgagatcttttgcaataaaacagttgct
gggagctcaagtgctgaactactggcaaccttttgtgacactatcctccgaaagggtgga
agtgagaaactaagtgacgaagccattgaagaaacactggagaaggtggttaagctgctt
gcatttattagtgacaaggacctttttgctgaattttataggaaaaaacttgcccgtcga
cttctttttgatcggagtgctaacgatgaacatgaaaggagtatactgtcaaaattgaag
cagcaatgtggtggacaatttacctcaaagatggaaggaatggtcacagatttgcaattg
gccaaggaacatcagtccagctttgatgagtatcttgccaataacccatccacacgtccg
gggattgatttgcaagtaaatgttctcacaactgggtactggccaacgtataaatcctct
gatatcaacctacctgcagaaatggctaggggagtggaagttttcaaggagttctatgac
ctgaagagcaagcacagaaaactaacatggatttactctttgggatcttgccacattaat
gccaagtttgaccaaaaaactattgagctggttgtgacgacctaccaggcttgtctcctg
atgctttttaatacttcagacaaactcagttactcagagattatgacccagtcaaacttg
agtgatgatgacttgcctagattgcttcattccctgtcatgtggcaagtataaaatcctt
agcaaggagccaaacacaaagactgttaaccaaaatgattactttgagttcaatcacaag
ttcaatgataggatgaggaggatcaaggttcctcttccacttgttgatgaaagaaagaag
gttgttgaagatgtcgacaaagacagacggtatgctattgatgctgcaattgtgcgcatc
atgaagagtcggaaagtgttgggtcatcaacagcttgtcttggagtgtgttgagcagttg
aatctcatgttcaagcctgacattaaagctatcaagaagcggatagaagatctgatctcc
cgagattatttagaaagagacaaggaaaacccaaacatgtttaagtacctggcttga
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