Populus trichocarpa (black cottonwood): 7479266
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Entry
7479266 CDS
T01077
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7479266
03410 Base excision repair
7479266
03420 Nucleotide excision repair
7479266
03430 Mismatch repair
7479266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7479266
03036 Chromosome and associated proteins [BR:
pop03036
]
7479266
03400 DNA repair and recombination proteins [BR:
pop03400
]
7479266
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
7479266
DNA Replication Termination Factors
ELG1-RFC complex
7479266
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
7479266
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
7479266
Check point factors
HRAD17(Rad24)-RFC complex
7479266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
Mg_chelatase
AAA_22
Rad17
Viral_helicase1
AAA_16
RuvB_N
AAA_11
AAA_24
AAA_5
AAA_19
ABC_tran
AAA_assoc_2
RCF1-5-like_lid
nSTAND3
AAA_25
AAA_30
AAA_28
DNAX_ATPase_lid
MeaB
RNA_helicase
AAA_18
IstB_IS21
DO-GTPase1
AAA_3
bpMoxR
NTPase_1
SLFN-g3_helicase
KTI12
AAA_7
SRP54
UvrD-helicase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
7479266
NCBI-ProteinID:
XP_002304476
UniProt:
B9GWE8
LinkDB
All DBs
Position
3:complement(14373123..14376517)
Genome browser
AA seq
330 aa
AA seq
DB search
MASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTT
SILALAHELLGPNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGQHKIVILDEAD
SMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMV
VVGAEQVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFHFVNQENVFKVCDQPHPLHVK
NMVRQVLEGKFDDACSGLKHLYDMGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAH
MRICDGVGSYLQLCGLLAKLALVRDTARAA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcgagcaacagcagtaactacgacattccatgggtagagaaatacaggccc
aacaaagtcgctgacatcgtgggcaaccaagacgccgtctctcgcctccaagtcattgct
cgcgatggaaacatgcctaatctcattttagccggtcctcctggaactggcaaaactaca
agtatcttggctcttgcacatgagcttctgggaccaaattcaaaggaggctgtcttggag
ctgaatgcatcagatgacaggggtatagatgttgtgaggaacaaaattaagatgtttgca
caaaagaaagtgacactgcctcctggacaacacaaaattgtaattcttgatgaagctgat
agcatgacatctggagcacaacaagccttgagacgaaccatggaaatatattcaaattcc
actcggtttgctcttgcatgcaacacatcttctaaaattattgagcctattcaaagtaga
tgtgccattgttcgattttcaagattatctgatcaagagatacttggtcgtctcatggtt
gtagttggagcagaacaggtcccttacgttcctgaaggtcttgaagctattatatttact
gctgatggagatatgaggcaggccttgaacaacttgcaagctacacatagtggattccat
tttgtcaaccaggaaaatgttttcaaggtctgtgatcagcctcatccattgcatgtgaag
aatatggtgcgccaggtgcttgagggaaaatttgatgatgcttgttctggtctgaagcat
ctctatgatatgggctattcccccactgacataattacaacccttttccgaatcataaag
aattatgatatggctgaatatatgaaattggagttcatgaaggaaactgggtttgcccat
atgagaatctgcgatggtgttggttcgtatcttcagctctgtggcctgttggccaagctt
gccttagttcgtgacacagccagagcagcataa
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integrated database retrieval system