Populus trichocarpa (black cottonwood): 7479289
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Entry
7479289 CDS
T01077
Name
(RefSeq) serine/threonine-protein phosphatase PP1 isoform X2
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7479289
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7479289
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7479289
03019 Messenger RNA biogenesis [BR:
pop03019
]
7479289
03041 Spliceosome [BR:
pop03041
]
7479289
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
7479289
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
7479289
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7479289
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7479289
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
7479289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
7479289
NCBI-ProteinID:
XP_002298008
UniProt:
B9GKC7
LinkDB
All DBs
Position
1:7853495..7858924
Genome browser
AA seq
320 aa
AA seq
DB search
MDESLLDDIIRRLVEAKNGRTTKQVHLTEAEIKQLCLASRGVFLSQPNLLELEAPIKICG
DVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRG
NHECASINRIYGFYDECKRRFNVRVWKTFTDCFNCLPVAALIDEKILCMHGGLSPELKSL
DQIRNLARPIDVPDHGLLCDLLWADPDKDMEGWGENDRGVSYTFGADKVVEFLRKQDLDL
VCRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILRASEKKG
KGGFGNNILRPGTPPHKGKS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggacgagagtttacttgacgacataatacggcggttagtggaagcgaagaatgggagg
acgacgaaacaagttcatttgactgaggcggaaatcaagcagctttgtttggcttctagg
ggggtttttcttagtcagccaaatcttctcgagcttgaagcacctattaagatctgtggt
gatgttcacggtcagttctcggatcttctacgattgtttgagtatggtggttacccacct
gaggcaaattatttgttcctgggggactatgttgatcgtggcaaacagagcatagagaca
atatgcctcctccttgcatacaagatcaaatacaaggagaacttcttccttcttaggggc
aaccatgaatgtgcttccatcaaccgtatatatgggttttatgatgagtgcaagaggagg
tttaacgttcgtgtctggaagacattcactgactgctttaattgtctgcctgtggctgct
cttatagatgaaaagatcctttgcatgcatggtggattgtctcctgagttgaagagcttg
gatcagatcaggaatcttgctcgccctattgatgtgccggaccatggtcttttatgtgat
ctattgtgggctgacccggataaagatatggaagggtggggagagaatgacaggggtgtg
tcatacacatttggggctgacaaggtcgttgaatttcttaggaaacaggaccttgatctt
gtttgccgagctcatcaggttgttgaagatggttatgagttttttgcaaagcgacagctg
gtcacaatattctctgcaccaaattactgtggtgagttcgataatgctggcgccatgatg
agtgtcgatgatactttgacttgttcctttcaaatccttagagcctctgagaagaaaggc
aaaggcggatttggcaacaacattttgagaccaggaactccacctcacaaggggaagagc
tga
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