Populus trichocarpa (black cottonwood): 7479329 Help Entry 7479329           CDS       T01077                                  Name (RefSeq) protein SPA1-RELATED 2   KO K16240   protein suppressor of PHYA-105 1 and protein SPA1-related 2 Organism pop  Populus trichocarpa (black cottonwood) Pathway pop04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:pop00001]  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     7479329  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:pop04121]     7479329 Ubiquitin system [BR:pop04121]  Ubiquitin ligases (E3)   Multi subunit type E3    Multi subunit type E3 associated proteins     7479329 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_TEP1_C Beta-prop_EML_2 Beta-prop_EIPR1 Beta-prop_RIG_2nd EIF3I Beta-prop_WDR19_1st Pkinase Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_IFT140_1st WD_LRWD1 WD40_RFWD3 Beta-prop_SPT8 WD40_like Beta-prop_SCAP Beta-prop_WDR35_TULP_N PK_Tyr_Ser-Thr Motif Other DBs NCBI-GeneID:  7479329 NCBI-ProteinID:  XP_024459969 LinkDB All DBs Position 1:7484667..7492612 Genome browser AA seq 1069 aa AA seqDB search MDEGLGDEVASMDVVEQAHLRGKESEHSVKPPESSNLLESREMDIAGVDDYRESSFHVLA DMLEGKNENRSASPMDASEQPCSSPRSIDDAGNMNEELMVRNFDGSNLAIVGTLNNRERM QTRQNQWPHLYQIGGGSMTGISRSNILYKDSGQAMLDVRRSSSSDILAQKTSSNERNEVS EQLTHPDFNGLSGNMSSHANIRTKILSKSGFSEFFVKNTLKGKGIVYRGPPHDSFKLQPR YQNNERAVGGPLAASDTPLNLSAKTVMMPSSHGIAGPRPAGSDHDGVSLREWLNAGRHKV NKVESLHVFRRIVDLVDYSHSQGVALPDLRPSSFKLLQSNQVKYLGSAAQRDLVESVKGR NAPYSDNHVVRRRLLEQGMFSSVAASVKKQKFSESMNYTSRWPQFSAKYGLKLESTCDGD IDATVSQNSLNEATEHNCNAEYGIQAKSISHQPSKLGQRQLTSISDQLEEKWYTSPEELS EGICRTASNIYGLGILLFELLGRFDSDRAHATAMSDLCHRILPPQLLSENPKEAGFCLWL LHPEPSSRPTAREILQSELINGLQEVSAEELSSSVDQDDAESELLLHFLVSLKEQKQKHA FKLVEDVRCLDTDIEEVGRRSCSKKHLHHSCLENDFINERQPTSEHKEPSRLEALSQVSP DFQTNNMRLMSNISQLESAYFSMRSKVQLAETDAATRQDKDLLINRKNWDLAQEDEETQN TTDCLGSFFDGLCKYARYSKFEARGLLRTGDFNNSANVICSLSFDRDADYFAAAGVSKKI KIFEFDSLFNDSVDIHYPVIEMSNESKLSCICWNSYIKSYLASTGYDGVVKLWDVNTGQV VFQYKEHEKRAWSVDFSQVYPTKLASGSDDCSVKLWSINEKNSTSTIRNIANVCCVQFSS HSTHLLAFGSADYRTYCYDLRNVRAPWCVLSGHDKAVSYVKFLDSETLVTASTDNTLKIW DLNKTSSSGLSPSACSLTLGGHTNEKNFVGLSVANGYIACGSETNEVYAYHRSLPMPITS HKFGSIDPISGKETDCDNGQFVSSVCWRGKSDMVVAANSSGCIKALQML NT seq 3210 nt NT seq  +upstreamnt  +downstreamnt atggacgaaggattaggtgatgaagtggcttcaatggacgtggtggagcaggcccacctc cgaggtaaagagagcgagcattccgtgaaaccacctgaaagctccaacttgttggaatct cgtgaaatggatatagctggtgtggatgattatcgtgagagctcctttcatgtacttgct gatatgttggagggtaagaatgaaaataggagtgcaagccctatggatgcatctgagcag ccatgctctagccctcgctctatagatgatgctgggaacatgaatgaagaattaatggtg agaaattttgatggttcaaatttagccattgttggtacactgaataatagggaaaggatg caaactaggcagaatcagtggccgcatctttatcaaattggagggggatccatgactggg atttctcgtagtaatatcttgtataaggacagtggtcaagcaatgctagatgtgcggcgc tcatcttcatctgacattttggctcaaaaaacctcgagcaatgaaagaaatgaagtctca gaacaattgacacatcctgactttaatgggttgtcaggcaatatgagctcgcatgctaat atccggacaaagattctatcgaaatcaggattctcagaattttttgtcaaaaacaccttg aaaggtaaggggattgtttatagagggcctccacatgatagcttcaaacttcaaccaaga taccagaacaatgaaagggctgttggtggacctttggcagcttctgatacccctttgaac ttgagtgctaaaactgtaatgatgccctcttcacatgggattgctgggccgaggcctgct ggttctgatcatgatggagtgagtttgagggaatggctgaatgctggacggcacaaagtg aataaagttgagagcttgcatgtatttagacggattgttgatctagtggattattctcat tcgcaaggagttgcattgcctgacttgcggccatctagctttaagttgttgcaatctaat caggttaaataccttggttcagctgctcagagagatttggttgaaagtgtcaagggtcga aatgcaccctactccgacaatcatgtggtcaggagaaggctgctggaacaaggaatgttt tcttctgttgctgcatctgtgaagaagcagaagttcagtgagagcatgaactataccagt cgctggcctcagttctctgcaaaatatggcttgaaacttgaatctacatgtgatggggac atcgatgctactgtttcacaaaattctctaaatgaagctactgaacataactgtaatgca gaatatggaattcaggccaagtccatcagccatcagccatctaaattaggtcaacgccag ttgacatctattagtgaccagttggaagagaaatggtatacaagtcccgaggagctcagt gaggggatctgcaggactgcatcaaatatttatggtcttggtattcttctatttgagttg cttggtcgttttgactctgacagagcacatgcaacagcaatgtcagacctttgtcacagg attcttcctccacaacttttatcagaaaatccaaaggaagctggattctgcctttggcta cttcatcctgaaccctcatcacgcccaacagcaagggaaatcctacaatctgaattgatt aatggattgcaagaggtgtccgcagaagaattgtcatcctctgttgaccaagatgatgcc gaatcagaacttttgttgcatttccttgtttcattgaaggagcagaagcagaagcacgcc tttaagttagtggaagatgttagatgcttggatactgatatcgaagaggttggtaggaga agctgctcaaagaaacacttgcaccattcttgcttagagaatgactttataaatgaaagg caacctacctctgagcataaagaaccttccaggttggaggcactttctcaagtatctcct gattttcagacaaacaatatgaggttgatgagcaatatcagccagcttgaaagtgcttat ttctccatgagatccaaagtccagcttgctgagactgatgctgccactcgccaagataag gacttactgataaatcgtaagaactgggatttagcacaggaggatgaagaaacacagaat accactgattgccttggatccttttttgatggtttgtgcaagtatgctcgttatagtaag tttgaagcacgtgggctactaagaaccggggacttcaataattctgcaaatgttatttgt tctttgagttttgaccgtgatgcagactattttgctgctgctggagtatcaaagaaaata aagatatttgagtttgattcactctttaatgactctgttgatattcattatccagtcatt gaaatgtcaaatgagtcaaagctcagctgcatttgctggaacagctacatcaagagctat ctggcttcaactggctatgatggtgttgttaagctatgggatgtgaatactggtcaagtg gtttttcaatataaggagcatgaaaagagagcttggtctgtggacttttctcaagtatat ccaacaaaattagccagtggaagtgatgattgttctgtgaagctgtggagcattaatgag aaaaatagtacaagcacaatcaggaacattgcaaatgtctgctgcgtgcagttctcttct cactctactcatttgctggcctttgggtctgcagattacagaacctattgctatgatctt cggaatgttagagccccctggtgtgtattgtctggccatgacaaagctgtgagctatgtt aaattcttggattctgaaactctggttactgcatcaactgacaatacgttaaagatttgg gatctcaataaaaccagctccagtggtttatcccctagtgcttgcagcttaacccttggt ggacacactaacgagaagaactttgtgggtctatctgttgccaatggttacatagcatgt ggatcagaaacaaatgaggtttatgcttaccatagatctctacctatgccaatcacttct cacaagtttggttcaattgatcctatttctggtaaggaaacagattgtgacaatgggcag tttgtttcaagtgtctgctggagagggaaatcagacatggttgttgctgctaattcgagt gggtgtataaaagcattgcaaatgctatga

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