Populus trichocarpa (black cottonwood): 7479491
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Entry
7479491 CDS
T01077
Name
(RefSeq) prolycopene isomerase, chloroplastic isoform X1
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00906
Carotenoid biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
7479491
Enzymes [BR:
pop01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
7479491
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GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
Thi4
FAD_oxidored
GIDA
GDI
FAD_binding_3
HI0933_like
Pyr_redox_2
GMC_oxred_N
AlaDh_PNT_C
Pyr_redox
UDPG_MGDP_dh_N
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
7479491
NCBI-ProteinID:
XP_024459270
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Position
6:complement(20727008..20732269)
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AA seq
613 aa
AA seq
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MSLGFKNSIFSGQFNTVQLGRFRPRSQKHRISSVEPVQTSVFSGYIVPRNIKSKIDSLGE
VKLNKDFILRSKAVLTVDKEVDIEGNEGVSRERSDYDVIVIGSGIVGLVAATQLAVKGAK
VLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNMITRALAAVGCEMEVIPDP
TTVHFHLPNNLSVKVPKEYSDFISELTAKFPHEKEGILKFYSECWKIFNALNSLELKSLE
EPIYLLGQFFQKPLECLTLAYYLPQNAGDIARKYINDPELLSFIDAECFIVSTVNALQTP
MINAGMVLCDRHFGGINYPVGGVGGIAKSLSKGLIDQGSEILYRANATNIILEHGKAVGV
RLSDGREFFAKTIISNATRWDTFGKLLKGETLPKEEENFQKVYVKAPSFLSIHMGVKAEV
LPPDTDCHHFVLEDDWARLEEPYGSIFLSIPTVLDSSLAPEGRHILHIFTTSSIEDWEGL
STEDYEAKKKVVAYEIISRLEKKLFPGLRSSITFMEVGSPKTHRRYLARDKGTYGPMPRS
TPKGLLGMPFNTTAVDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGIEKRSPVMDA
ALLRLLGWLRTLA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagtctagggttcaagaattctatattttctggtcagttcaatactgtccagttaggg
aggttcagacccagaagccaaaaacataggatttcgtctgtagaacctgtccaaacctca
gttttcagtggttatattgtgcccagaaacataaaaagcaaaattgacagtcttggtgaa
gtaaagttaaataaggactttattttgaggtcaaaggccgtgttaactgtggataaagaa
gtggatattgaaggaaatgaaggagtgagcagagagaggagtgattatgatgtaattgtt
attgggtctggtattgttgggttggttgctgctacacagttggcagtgaagggagctaaa
gttttggtcttggagaagtatgtgattcctggtgggagttctgggtattatgagagggat
ggatatacttttgatgttggctcttctgttatgtttggtttcagtgacaagggcaaccta
aatatgataacacgagcattggcagcagttggttgtgaaatggaggtgattcctgatccc
actactgtccattttcatctacctaataacctttctgttaaagttcccaaagagtacagc
gacttcatctcagaacttactgctaagtttccccatgaaaaggaagggatccttaaattc
tatagtgaatgctggaagatattcaatgccttgaactctttggaactgaagtcgctcgag
gagccaatctacctgcttggacaattctttcagaagcctcttgaatgcttgacactagct
tattatctgccccaaaatgctggagacatcgctcgaaagtacataaacgatcctgagttg
ttgtctttcattgatgcagagtgtttcatagtgagcacagtcaatgctttgcagacccca
atgatcaatgcgggcatggttttatgtgataggcattttggagggatcaattatcctgtt
ggtggggttggtggaattgcaaagtccttgtcaaaaggtctgattgatcagggcagtgaa
attctttacagggcaaacgcgaccaacatcattcttgagcatggaaaggctgtaggagtg
aggctttcagatggaagggagttctttgccaaaaccataatatcaaatgctactagatgg
gatacctttgggaagttgttgaaaggagaaacccttccaaaagaggaagaaaattttcaa
aaagtttatgtcaaggctccatcttttctttccattcacatgggtgttaaagccgaggtt
ctaccaccagatacagattgccaccactttgttcttgaggatgactgggcaagattagag
gagccttatggaagcatattcctaagcattccaactgttcttgattcatcattggctcct
gaaggccgtcatatactccacatatttacaacatcttccattgaagactgggagggactc
tcgacagaggactacgaggcaaagaagaaggttgtggcttatgagattataagcagattg
gagaagaaactttttccggggctcagatcatcaattactttcatggaggtaggttcaccc
aagacacacaggaggtacttggctcgtgacaagggtacatatggaccaatgccacgcagt
actcctaaaggtttattgggaatgccattcaatacaacagctgtagatggtctttactgt
gttggcgatagctgctttccaggacagggtgttatagctgtagctttttcaggagtaatg
tgtgctcatcgagtagctgctgatattggcattgagaaaaggtcccctgtaatggatgct
gctctcctccggcttcttggttggttaaggaccttggcttga
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