Populus trichocarpa (black cottonwood): 7479507
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Entry
7479507 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7479507
03041 Spliceosome [BR:
pop03041
]
7479507
03036 Chromosome and associated proteins [BR:
pop03036
]
7479507
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7479507
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7479507
mRNA cycle factors
Common to processing body (P body) and stress granule
7479507
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
7479507
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
7479507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
7479507
NCBI-ProteinID:
XP_024459305
LinkDB
All DBs
Position
6:complement(20423303..20428762)
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AA seq
614 aa
AA seq
DB search
MRTSWADSVANSASENAASGPRPTRATYIPPHLRNRPPSSDFLAPPPAAPSLGNDRVGYG
GPAGGSRWGGGGGSASKPDSGRLGYGSGGRGGGGGGGGGGGWNNRMERGREREVNPFDED
GDAEPAFGVQENTGINFDAYEDIPVETSGQNVPPPVNTFAEIDLGEAVNQNIRRCKYVKP
TPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAGIMREQYVQRPHGGRTVYPLALI
LSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQQLRELERGVDVLVATPGRLVDLV
ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCGRRQTMLFSATFPKEIQR
LASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETDKRSHLMDLLHAQRETEVNGKHSLTL
VFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRSFKSGKTPILVATDVAARGL
DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNLSLARPLADLMQEANQ
EVPAWLTRYASRVSFSGGKNRRSGGARFGGRDMRRDGSFNRGVDYYGGNSSSGGYGVSAG
YGGGYNPAVASAWD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcatgggcagattctgtggctaactctgcatctgagaatgcagcatctggt
ccgcgtcctactcgtgccacttacattccgccacaccttcgtaaccggccaccatcttct
gatttcctggcgccaccacctgctgctccgtcattagggaatgatcgtgtaggttatggt
gggccagcgggtggttctcgatggggtggcggtggcggcagtgcttcgaaaccggattct
gggcgcttaggttatggttctggtggtagaggaggtggtggtggtggtggtggtggtggt
ggttggaataatagaatggaacgtgggagggagcgtgaggtgaatccatttgatgaagat
ggtgatgcagagccggcttttggcgtgcaagagaatacaggaattaactttgatgcgtat
gaggatattcctgtggagacgagtgggcaaaatgtgccaccacctgtgaatacctttgca
gagatagacctgggtgaggcagtgaatcagaatattcggagatgcaagtatgtgaagcca
actccagtgcagcgcaatgcaatcccaatattgcttgctgggagggacctgatggcttgt
gctcagacagggtcagggaagacagctgccttttgctttccaataattgctggaattatg
cgggagcagtatgtgcagagaccacatggagggaggacagtgtacccactggctctcatt
ctttctcctacaagggagctttcgtgtcagatacacgatgaagccaaaaaattcgcctat
caaactggtgtcaaggtggtggtagtttatggaggtgctcctgtcaaccaacagttgcga
gaacttgagagaggggttgatgttctagtggcaactcctggacggttagtggatttggtt
gagagggctagagtgtcattgcagatgatcagatatttagcacttgatgaggcagacagg
atgctggatatgggatttgaacctcagattagaaagatagtggaacaaatggacatgccc
ccatgtggcaggagacagacaatgctgttcagtgccacctttcctaaagaaatacagaga
cttgcatctgattttctttcaaattacatatttttggctgtcggaagggtcggttcgagt
actgatttaattgttcaaagagttgaatatgttcatgagactgacaagagaagtcatctc
atggaccttcttcatgctcagagagaaactgaagttaatggcaagcattctctgacatta
gtttttgtggagacaaagaagggagccgactcattggaacattggttgtatgtcaataaa
tttcctgctacatcaattcatggagatagatcacaacaggaaagagaaatggcacttaga
tcattcaagagtgggaagacgccaattctagttgcgacagatgtggcagcaaggggtctt
gatataccccatgtggctcatgtggtgaattttgatcttccaaatgacattgacgattat
gttcaccggatagggcgaacagggcgagctggaaaaacaggtctggctacagcatttttt
aatgagaataatttgtcattagcaagacctctagctgatcttatgcaagaagcaaatcaa
gaagtgcctgcctggctcacccgttatgcttcacgggtttcatttagtggtggcaagaat
cggcgctctgggggagcccgttttggtggccgtgatatgagaagggatggctcttttaac
aggggtgtagattattatggaggaaacagtagtagcggtggatatggggtttctgctggt
tatggtgggggttacaatccagctgtagccagtgcttgggattag
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