Populus trichocarpa (black cottonwood): 7479528
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Entry
7479528 CDS
T01077
Name
(RefSeq) DNA polymerase delta small subunit isoform X1
KO
K02328
DNA polymerase delta subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7479528
03410 Base excision repair
7479528
03420 Nucleotide excision repair
7479528
03430 Mismatch repair
7479528
03440 Homologous recombination
7479528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7479528
03400 DNA repair and recombination proteins [BR:
pop03400
]
7479528
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
7479528
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
7479528
MMR (mismatch excision repair)
DNA polymerase delta complex
7479528
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_E_B
DNA_pol_D_N
Motif
Other DBs
NCBI-GeneID:
7479528
NCBI-ProteinID:
XP_002309305
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All DBs
Position
6:19933133..19938564
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AA seq
454 aa
AA seq
DB search
MAAAATCFRFPAMTGMEIDIEKNIQRKRSTYQSLDETFDIQNETYRGQQYSQIYFARLHL
MRTLLYSLVTHWKPHVPVCTVLGLEEGKECIIVGTLYKHMKLKPCVLDEYSKERSAVPLV
KPHNFMHPDDHLVLEDESGRVKLGGTVLSPSKYVTGGVVALHGKETTAGDFLVLDVFEAG
LAPQIEPQLKSREDKYVVFVSGVSVGSSTSNPLQFQLLVDHITGHLGDDQEQGIAAEIVH
VVFAGNSVEIPSGLLNGQNLASKDQSRLSEPVQELDIWLTQIAAGVSVDIMPGSNDPANF
ALPQQPLNRCLFPGSRAYNTFNLCTNPHCFELDGVRFLGTSGQNIDDLKKYSEARDELEF
MERTLKWRHLAPTAPNTLGCYPFTDKDPFLIESCPHVYFVGNQDKYGTHILNGSEGQLVR
LISVPKFCDTGIAVVLNLRNLECHTLSFGAQFSP
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccgctacttgtttccgttttcccgccatgactggaatggaaatcgacatt
gagaaaaatatccagagaaagcgttctacttaccaatctctggatgagacctttgatatt
caaaacgagacctatagaggccagcaatatagtcaaatatatttcgctcgtcttcacttg
atgagaactctgctttactctctcgttacccattggaaaccccatgtccctgtttgtacg
gttttggggttggaagaaggcaaggaatgcatcattgttgggaccctgtacaagcacatg
aaacttaaaccttgtgtccttgatgaatattctaaggagagatctgcagtgcctcttgtc
aagcctcataacttcatgcatccggatgatcatttggttttggaagatgaaagtggaaga
gttaagcttggtggcaccgtgctttcaccttcaaaatatgttacaggcggtgtcgttgct
ttgcatggaaaggaaactactgctggtgactttttggttctagatgtctttgaagctggt
ttagcaccacaaatagagccccaacttaaatcaagagaggacaagtatgttgtttttgtt
tctggggtaagtgttggaagcagcacatcaaatcctctccaatttcagcttcttgtggat
catataacaggacatctgggagatgatcaggaacagggtattgcggcagagatagttcat
gttgtgtttgcaggtaattcagtggaaattccatctggtcttctaaatggacagaatttg
gcttcaaaggatcaatctaggctctctgaaccagttcaagagctggatatttggttgact
cagattgctgcaggtgtgtctgtggatatcatgccaggatcaaatgatccagcaaacttt
gctttacctcaacagcctttgaacagatgcctttttcctggatcaagagcttataacact
tttaatttgtgtactaatcctcattgttttgagcttgatggtgtcaggtttcttggaaca
tcaggccagaacattgatgatctgaaaaagtattcggaagcaagggatgagcttgaattt
atggaaaggacattaaagtggaggcatctggcaccaacagcacctaacacactcggttgt
tatcctttcactgataaggatccttttttgattgagagctgtccgcatgtttactttgtt
ggtaaccaagataaatatggaactcacattttaaacggttcagaagggcagttggtgaga
cttatttccgttcctaaattctgtgatactggaattgcggttgtgcttaatctgagaaat
ctggaatgccatactctcagttttggtgctcaattcagcccttaa
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