KEGG   Populus trichocarpa (black cottonwood): 7479624
Entry
7479624           CDS       T01077                                 
Name
(RefSeq) UBP1-associated protein 2B
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7479624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7479624
   03041 Spliceosome [BR:pop03041]
    7479624
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7479624
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7479624
Spliceosome [BR:pop03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    7479624
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 BUD22
Other DBs
NCBI-GeneID: 7479624
NCBI-ProteinID: XP_002307930
UniProt: B9HDH2
LinkDB
Position
6:1689296..1694441
AA seq 474 aa
MARKRKLDSKSTETAEEPPKKQQQQEEPPKEEPQEEEVEVEEEEEEEYEEVEEEEEDNED
DPDGETNQNAQISAVENLNDDDDEDEEPIEKLLEPFGKDQLINLLREAADGHRDVADKIR
QVADQDPVHRKIFVHGLGWDTNAEALINAFKPYGEIEDCKAVCDKVTGKSKGYGFILFKK
RSGARNALKEPQKKIGNRMAACQLASTGPVPQSSAGPSGPIAAAAQTQQPVSEYTLRKIY
VSNVGANLDPQKLMSFFSEFGEIEEGPLGLDKATGKPKGFCLFVYKTVESAKKALEEPHK
SFEGHILHCQKAVDGPKHAKSQKPPQQHHNMQSSHYQRNDGGGYVASGGRGGHLMAPAAA
GAGIGFNQSAAAPALNPALGQALTALLATQGAGLGGLTNLLGTLGSAAAVTQGGVPSAAH
GMQGAYGNQASISPGVIGAYANQGAMQGGYPNQQMGQGGSGRGQHGQYTPYMGH
NT seq 1425 nt   +upstreamnt  +downstreamnt
atggctagaaaacgaaagctcgactccaaatccaccgaaacagcagaagaaccgccgaag
aaacaacagcaacaagaagaaccaccaaaggaagaacctcaagaagaagaagtagaagta
gaagaggaggaagaagaagaatatgaagaagtggaagaggaggaagaagataatgaagat
gatccagatggagaaaccaatcaaaacgctcagatctcagctgttgagaatctaaacgac
gacgatgacgaagacgaggagccgattgagaaacttcttgaaccgtttggaaaagaccag
ttgattaatttacttcgtgaagcagcggatggtcaccgagatgttgcagataaaatccgg
caagtagctgaccaagatccggtgcaccggaagatttttgttcatgggcttggttgggat
acgaatgctgaggctttgatcaatgcgtttaagccttatggtgagattgaggactgtaaa
gctgtgtgcgataaggttacggggaaatcgaagggttatgggtttattttgtttaagaaa
aggagtggggcgcggaatgcgttgaaggagccgcagaagaagatagggaataggatggca
gcttgtcaattggcttctactggtccggttccacagtccagtgctggaccctctgggccg
atcgctgctgctgcgcaaacacagcagccggtttcggagtatacgctgaggaagatttat
gtgagtaatgtgggagcaaatttggatcctcagaagctgatgagtttcttttcggagttt
ggagagattgaagaaggaccattagggcttgataaagcgactgggaaaccgaaagggttt
tgtttgtttgtttataagacagttgagagtgctaagaaagcgttagaagagccacataag
agttttgaagggcacattttgcattgtcagaaagctgttgatgggccaaaacatgcgaaa
tcgcagaaaccaccacagcaacatcataatatgcaaagctcgcattaccagaggaatgat
ggaggtgggtatgttgctagtgggggtcgtggtggtcatttaatggccccggctgctgct
ggtgctgggatcgggtttaatcagagtgctgctgctcctgctttgaaccctgcacttgga
caggcgctgaccgcattgcttgccactcagggtgctggactgggagggctcactaatttg
cttgggactttggggtctgccgcggctgtgacccagggtggtgtacctagtgcagctcat
ggaatgcagggtgcctatgggaaccaggcgagcataagtcctggagtgataggagcttat
gcgaatcagggagctatgcagggtggatatccaaatcagcagatgggacagggtggttct
gggagaggacaacatgggcaatataccccttatatgggtcactag

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