Populus trichocarpa (black cottonwood): 7479625
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Entry
7479625 CDS
T01077
Name
(RefSeq) protein argonaute 4A isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7479625
03036 Chromosome and associated proteins [BR:
pop03036
]
7479625
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
7479625
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
7479625
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
7479625
microRNA pathway
RISC loading complex
7479625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
THF_DHG_CYH
Motif
Other DBs
NCBI-GeneID:
7479625
NCBI-ProteinID:
XP_002308843
UniProt:
B9HDH5
LinkDB
All DBs
Position
6:complement(1701455..1709683)
Genome browser
AA seq
944 aa
AA seq
DB search
MRHKMESTEEPEALPPPPSDALPPPDALPPPDALPPPDALPPPPPEIPPNVVPVQLTTDS
VPEETKKISKPKRSPIARRGFGSRGQKIQLLSNHFKVSISNTGGHFFHYCVSLSYEDGRP
IDAKGIGRRLIDKVHETYGSDLAGKDFAYDGEKSLFTIGALPRNKMEFTVLLDSFSSNRN
SGNGSPVGNGSPNETDKKRMRRAFQSKTFKVEMSFAAKIPMQAIAAALRGQESENSQEAL
RVLDIILRQHAAKQGCLLVRQSFFHDDPKNYVDLGGGVLGCRGFHSSFRTSQGGLSLNID
GSTTTIIQPGPLIDFLIANQNVSNPFQIDWAKAKRTLKNLRIRVSPTNQEYRITGLSENT
CKEQMFSLKSRASDGNDVESVDITVYHYFVNHRSIDLRYSGDLPCINVGKPKRPTYIPVE
LCSLLPLQRYIKALTVLQRSQLVEKSRQKPQEKIRILTDVMKSNNYAAEQMLRSCGITIS
SQFTQVQGRVLTAPKLKAGNGEDVIPRNGRWNFNHKKFFEPSKIENWAVVNFSARCDVRG
LVRDLIRFGEMKGILISDPVDVVEENGQFRRAPPLVRVEKMFEQIQKAFPNAPPRFLVCL
LPDRKNSDIYGPWKRKNLAEYGIFNQCLAPTRVNEQYILNVLLKINAKLGGLNSLLAMEQ
SRNIPFVSKVPTIIFGMDVSHGSPGQSDMPSIAAVVSSRNWPLLSRYRASVRSQSPKVEM
VDSLFTLTPDKKDDSGIVRELLLDYYRSSGQTKPAQIIIFRDGVSESQFNQVLNIELDQI
IEACKFLDESWSPKFTVIVAQKNHHTKFFQDGSPDNVPPGTVIDNAVCHPQSYDFYMCAH
AGMIGTTRPTHYHVLLDEIGFSADDLQELIHSLSYVYQRSTTAISVVAPVRYAHLAATQI
SQFLKCDDMSETSSSHGGLTSAGQTPVPELPELHRNVCSSMFFC
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgaggcacaaaatggaatccactgaagagccagaggccctccctccacctccatccgat
gccctccctccacctgatgccctccctccacctgatgccctccctccacctgatgccctc
cctccacctccacctgagataccgccaaatgtagttcctgttcaattgacaacagactct
gttccggaggaaacaaaaaagatatcaaaaccaaaacgttccccgattgccaggcgtgga
tttgggtctagagggcaaaaaatacaactgctctcaaatcatttcaaagtttccatctct
aatactggtggccacttttttcattactgtgtttccttgtcttatgaggatggtcgccct
attgatgcaaagggcattgggagaagattaattgataaagttcatgagacctatggctca
gaccttgctgggaaggactttgcatatgatggagagaagagcttatttacaattggtgct
ctgcctcgaaacaaaatggaattcactgttttgctcgatagtttctcatcaaataggaat
tctggaaatggcagtcctgttggcaacggaagtccaaacgagactgataaaaagaggatg
aggcgggcattccagtccaaaacatttaaagtggagatgagttttgctgccaaaatccct
atgcaggctattgcagctgctttgcgtggtcaagaatcagaaaactcacaggaagcctta
agagtcttagacatcattttaagacagcatgcagccaaacagggttgccttcttgttcgc
cagtcattctttcacgatgatccaaagaactatgttgatctgggaggaggtgtccttgga
tgccgaggatttcattcgagctttagaacctcgcagggtggattatccctaaatatagat
ggttcgactacaacgataatacagcctgggcctcttattgactttctcatagccaaccag
aatgtgtcaaacccctttcagattgactgggcaaaggctaagcgaacattgaaaaatctg
aggataagggtgtcacctaccaatcaagagtacagaatcactggcttgagtgaaaatact
tgcaaagagcaaatgttctctctgaaatcaagagcatctgatggaaatgatgttgaaagt
gttgacattacagtttaccattattttgtaaatcatcgcagcatagatttacgctactct
ggagatttgccttgcatcaatgttggcaagcctaaaaggcccacttacattcctgtcgag
ctttgttcactgcttcccttgcaacgctatataaaggcactaactgtccttcagagatca
cagttagtagaaaaatcaagacaaaaaccacaagaaaaaattaggatcttaactgatgtt
atgaaaagcaacaactatgctgcagaacaaatgttgcgttcttgtggtatcaccatcagc
agccagtttactcaagttcaaggccgtgtcctaactgctccaaagttaaaggcaggaaat
ggcgaggatgttattccaagaaatgggcggtggaattttaatcataagaaatttttcgaa
ccttctaaaattgaaaactgggccgtggtgaacttttctgctcgttgtgatgtgcgtggt
ctagtcagagatttgataagatttggagaaatgaaagggattctcataagtgacccggtg
gatgttgttgaagagaatggtcagtttcgacgggcaccgcctcttgttcgagtggagaag
atgtttgaacagatacagaaagcatttccaaatgcacctcctcgctttctcgtgtgtctt
cttcctgataggaagaactctgacatatatggtccttggaaaagaaagaatcttgcagaa
tatggaattttcaatcaatgcctggcacccactagagttaatgagcagtatatacttaat
gttctcctgaagataaatgctaagcttggtggtttgaattctttgttggccatggagcaa
tcacgaaacatcccattcgtctcgaaggttcctacaataatatttggaatggatgtatca
catggttcgcctggtcagtctgacatgccctccattgctgcggttgtcagttctagaaac
tggcctctactttctcgttatagagcttctgtgcgtagtcagtcaccaaaagttgagatg
gtagattctctttttacactaacaccggataagaaagatgattctgggattgtcagggaa
ttgttgttggactactataggagttctggccaaacaaaaccagctcagataatcatattc
agggatggagttagcgagtcacagttcaatcaagtcctcaacatcgagctggatcaaatc
attgaggcatgcaagttccttgatgaaagctggtcacccaagttcactgttattgttgca
cagaaaaatcatcacactaaatttttccaagatggatctccagacaatgttcctcctgga
accgttattgataatgctgtttgtcacccacaaagctatgatttctacatgtgtgcacat
gcagggatgataggaacaacaaggccaacacattatcacgttcttttagatgagattggc
ttttcagctgatgatctacaggagttgattcactctttgtcttatgtgtaccaaagaagc
acaacagcaatatctgtagttgctcctgtccgttatgctcacttggcagcaactcagatt
tcacaattcttgaagtgtgatgacatgtcagagacatcctcgagccatggaggtctaact
tctgctgggcaaacccctgtgcccgagcttcctgagctacaccggaatgtctgcagctct
atgtttttctgctga
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