KEGG   Populus trichocarpa (black cottonwood): 7479660
Entry
7479660           CDS       T01077                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7479660
   03400 DNA repair and recombination proteins [BR:pop03400]
    7479660
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7479660
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7479660
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    7479660
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-RING_2 zf-RING_5 zf-C3HC4_3 zf-C3HC4_2 DEAD ResIII AAA_34 zf-ANAPC11 Rad50_zn_hook zf-rbx1 zf-RING_UBOX DUF1644 ScsC_N Prok-RING_4 zf-UDP
Other DBs
NCBI-GeneID: 7479660
NCBI-ProteinID: XP_024460245
LinkDB
Position
6:complement(2280046..2284758)
AA seq 880 aa
MEEFQEDREDPVSLYMSLDNWQDCSYLQETPNESFMVGFVIANIVGLQYYSGTITGRELV
GLVREPLNPFDQNALKVLNTRCLQVGHIERSVAAVLSPLIDSNMINVEGIVPNSRSGGNK
YKIPCQVHVFARVEDFESVKTAISRGGLVLLSQMEVGFGLSEAMVVKEKNKKSGLKSLDE
IFKLVDENVNKKGKLGALEPPKEVIKSQLFEHQKEGLWWLVNRENSGELPPFWEEKDGEF
VNVLTNYHTNRRPEPLRGGIFADDMGLGKTLALLSLIAFDKCGGGTGVVGGNKDNVAEEI
GGDDEDVSVSGSKKGKRGRASKKVIGGRKKRKVEDTLSDGNVKGKSVLMADKSSGVPCAK
TTLIVCPPAVFSTWITQLEEHTQRGSLGVYMYYGERTREVEELKKHDIVLTTYSTLAAED
PWEDSPVKKIDWCRVILDEAHVIKNANSQQSRAVTKLNAKRRWVVTGTPIQNGSLDLFSL
MAFLRFEPFSIKSYWQSLLQRPLAQGNKKGLSRLQVLMATISLRRTKDKGVVGLPSKTVE
THYIELSGEERELYDQMEAEAKGVVQNFINTNNLMRNFSTVLCIILRLRQICNDLALCPS
DLRSLLPSNSIEDVSNNPELLMKMVTVLQDGEDFDCPICICPPTETVITRCAHIFCRPCI
LKTLQRAKQCCPLCRRPLSVSDLFSAPPESSGSDNANTSSRTTTSSKVSALIKLLIASRV
ENPARKSVVFSQFQKMLVLLEEPLKEAGFKILRLDGSMNAKKRAQVIKQFGVPGPDGPTV
LLASLKASGAGINLAVASRVYLLEPWWNPAVEEQAMDRVHRIGQEEDVTVVRLIAQSSIE
ERILEMQERKKKLAKEAFGRRGTKTQREVGIDDLRALMSL
NT seq 2643 nt   +upstreamnt  +downstreamnt
atggaagaatttcaagaggatcgtgaagacccagtgagcctttacatgtctcttgataat
tggcaggattgttcttatttacaagaaaccccaaatgagtcattcatggttggttttgtt
atagccaatatagtgggtttacagtactactcaggcacaattactggccgtgaattggtt
ggtcttgtgagggaaccacttaacccttttgatcagaatgctttaaaggtactgaacact
aggtgtcttcaagtgggtcacattgaaaggtcagttgctgctgttttatctcctttaatt
gattctaatatgattaatgttgaaggtatagtgcctaattctaggagtggtggtaataag
tataaaattccctgtcaagttcatgtctttgctagggtagaggattttgagagtgttaaa
actgcgatttcgcgaggtggcttggttttactttctcaaatggaagtaggttttgggtta
tctgaggctatggtggttaaagagaagaataagaaaagcgggctaaagagtttggatgag
atatttaaattggttgatgagaacgtgaataagaaagggaaattgggggctttagagcct
ccaaaggaagtgataaagtctcaactttttgagcatcaaaaagaagggttatggtggttg
gttaatagagagaattctggtgaactacctcctttttgggaggagaaagatggggagttt
gtgaatgttttgacgaattatcatactaataggagaccggagcctctgcgaggtgggatt
tttgctgatgatatggggttgggcaagactctagctttactctctttgattgcttttgat
aaatgtggtggtggtactggtgttgttggaggcaataaagacaatgttgctgaagaaata
ggtggggatgatgaggatgtatctgtttctggtagtaagaagggtaagaggggtagagcg
agtaaaaaggtcattggaggacggaaaaagcgtaaagttgaggataccctttcagatgga
aatgtgaagggaaagtctgtcctcatggctgataagtcttctggtgttccgtgtgctaag
actacattaattgtgtgccctcctgctgtattttcaacatggataactcagctagaggag
catactcagcgtgggtcattgggtgtatatatgtattatggggaaaggactagagaagtt
gaggagcttaagaagcatgatatagtattgacaacatattctactttggctgccgaggac
ccatgggaagactcccctgtgaagaagattgactggtgccgagtcattttggatgaggcg
catgtgattaagaatgcaaattctcagcaaagtcgagcagttaccaaattgaatgctaag
cggagatgggttgttacaggaacgcctatccagaatggatcacttgatttgttttctctg
atggcctttttgaggtttgagccattctccatcaagagctactggcaaagcctattacag
aggccacttgctcagggtaacaaaaaagggctctcacgactgcaggttttaatggcaacc
atttctttacggagaacaaaagataagggtgtagttggattgccatcaaaaactgtagag
actcattacattgaactttctggtgaagaacgtgaactgtatgatcagatggaagcagaa
gccaagggtgttgtccaaaattttatcaacaccaacaatctaatgcgcaacttttcgact
gtactttgtataattttacgacttcgccagatatgtaatgatttggcattgtgtccttct
gatctgaggtcactcctcccctctaacagtattgaagatgtatccaataacccggaattg
cttatgaagatggtcacggtgctacaagatggtgaagattttgactgtccgatatgcatt
tgtccgccaactgagactgtaataacacgctgcgctcacatattttgccgaccatgcatt
ttgaaaaccctgcagcgcgccaaacaatgctgtccactttgtcgccgtcctctatccgtg
tctgacctgttctcagcccctcctgaatcttctggttctgacaacgcaaacacatcttca
agaacaactacgtcttctaaagtctcagctctcataaaactcttgatagcatcaagggtt
gaaaaccctgcaagaaagtcggtagttttttcacaattccagaagatgttggtattactt
gaggagccactaaaagaagctggtttcaagatcttgcggttagatgggtcaatgaatgca
aaaaagagagctcaagttatcaagcaatttggagtgccaggaccagatggacccacagtt
ctgcttgcaagtctaaaggcttcaggagctggtataaaccttgcagttgcttccagagtc
tacttgttggagccatggtggaatccagcagttgaggaacaggctatggaccgtgtccac
cgaattggacaggaggaggatgtaacagttgtgcggctgatcgctcaaagcagcattgaa
gagaggatattagagatgcaggaaaggaagaagaaactggcaaaagaagcttttggaagg
cgaggaacaaagacccaaagggaggttggcatagacgatctccgtgcactcatgtccttg
tga

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