| Entry |
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| Name |
(RefSeq) nonsense-mediated mRNA decay factor SMG7
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| KO |
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| Organism |
pop Populus trichocarpa (black cottonwood)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pop00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7479669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pop03019]
7479669
Messenger RNA biogenesis [BR:pop03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
7479669
mRNA cycle factors
Common to processing body (P body) and stress granule
7479669
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6:2539246..2546421
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| AA seq |
954 aa
MTVPMDNPVDLSSRDRVQRLYDKNVELGNRLRRSAQARIPSDFTVWQQMRENYEAIILED
HAFSEQHEIEYALWQLHYRRIEEFRTHCKAALASNGSVTSQNGTMIARPERITKIRSQFK
TFLSEATGFYHDLMLKIRAKCGLPLVSFSDNSESQNIMCGEGNKATMMRKGLISCHRCLI
YLGDLSRYKGLYGEGDSKISDFSAASSYYKQASSLWPSSGNPHHQLGILATYSGYEFEAI
YCYFRSLAVDNPFSTARDNLIIEFEKNRQSFSQLCGDAKASLTKNATRQIGRRGRGRGSK
MSPLKDNKKDASALKKNTSSIPETLKAFKIRFVRLNGILFTRTSLETFVEVLSMVKSDLL
ELLSSGPKEEYNFDSSAEDNGLVIVRLISILIFTIHNVNREAKLESYADILQRSVLLQNA
FTAIFDLMGLVIKRCTQLNDPLASFLLPGVMIFLEWLACHPDFATGIEVEEHQAAARLFF
WENCISFLNKLLSNGTMPIDVDGEDACFSNMSSYDESETSNRLALWEDFELRGFLPLAPA
QLILDFSRKQSVTSDVGVKEKKACLQRILYAGKALVSLVRVGQQGMYFDSESKKFAIGAE
PQTAHSFEVAASLEMSLNVSGQKYPAVEKLSVEQTPLYMDGEEEDEVIIFKPLMTDRHFD
VNALELSTFEIPSNASQGNMESCIGSVPVSCDSYYLSNGFNRSTVGPKSPASVAPLHFQA
LQPTASKWPAKSEGSISNGLNNFNLVGYGLVMKSGLQEHQVVLQPSAVSLPLPLFVNPSA
GNLLPAKVPDTVVHLKSEPVMSSVSGFDSLSLKASSVFPASSRLNPVSRPVHHLGPPPGF
SSVPPKAKCEILSGIGQENYDFHMDDYSWLDGYQPPSSAKATVFNNSINHPEQSCHHTTA
NDGLTGTRMFPFPGKQLQTFPMKIESQNGSLNRQLPDHLKLYQEWQQQQLAKIG |
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| NT seq |
2865 nt +upstreamnt +downstreamnt
atgacggttccgatggataatccagtggatctttcatcgcgggaccgtgttcaacgtctt
tatgacaagaatgttgagttgggcaataggcttcggaggtcagcccaagcaagaattcca
tctgattttactgtttggcaacagatgcgagagaattatgaggcaattatcctagaagat
catgctttctcggagcaacatgaaatagaatatgctttgtggcagttgcattaccggcgt
attgaggagtttcgaactcattgcaaagctgctctagcttcaaatggttcagttacatct
cagaatggaacaatgattgcaagacctgaacgaattacaaaaattcgttctcagtttaaa
acctttctgtctgaagcaactggattctatcatgatttaatgttgaaaatcagagcaaag
tgtggtcttcctctagtttctttttcagataattcggagagtcagaatattatgtgtgga
gaaggaaataaagctactatgatgaggaaaggcctgatttcctgccaccgttgtctgatt
taccttggtgacctttcacgttataaaggcttatatggtgaaggagactcaaaaataagt
gatttttcagccgcgtcaagttactataagcaagcttcttcattgtggccttcaagtggc
aaccctcaccaccagcttggaatattagctacttattcagggtatgaatttgaagcaata
tactgctactttaggagtctagctgttgacaaccccttctcaactgccagagataacttg
attattgaatttgagaagaatcgtcaaagtttttcccagctctgtggggatgccaaagct
tcattgacgaagaatgcaacaaggcaaatcggtaggagaggaagaggcagaggtagcaaa
atgtctcccttgaaagacaataaaaaagatgcaagtgctctaaagaaaaacacatccagt
attcctgaaactttaaaagctttcaaaattagatttgtccgactaaatggcatcctattt
acacgaacaagtttggaaacttttgtagaggttctttcaatggtcaaaagtgacttgctt
gaacttctgtcgtctgggccaaaagaagagtacaattttgattcaagtgctgaggataat
gggcttgtgattgttaggcttatatccattcttatattcacaatccataatgtgaatcgg
gaagctaagcttgagtcatatgctgacatcttgcaacgctcagttttgcttcagaatgct
tttactgccatttttgacttgatggggctcgttattaagagatgcacacaactgaatgat
cctttggctagctttctgttgcctggagtgatgatttttttggagtggttagcctgtcat
ccagattttgctactggcatcgaagtggaagagcatcaagctgctgctagattgttcttt
tgggagaattgtatttcttttttgaacaagctcttgtcaaatgggaccatgcccattgat
gtggacggagaggatgcttgtttttccaacatgagcagctatgatgaaagtgaaacctcc
aacaggcttgcattgtgggaggacttcgaattgagagggtttttgcctcttgctccagca
caattgattcttgatttttcaaggaagcaatctgtcacaagtgatgttggtgttaaggag
aaaaaggcatgtcttcagaggattctatatgctggaaaagctcttgtaagcctagttcgg
gttgggcagcaaggcatgtattttgactcagagtcgaagaaatttgccattggtgctgag
cctcaaacagcccatagttttgaggtggctgcttctcttgaaatgtctttaaatgtttcg
gggcaaaaatatccagctgtggagaaattgagtgtggaacagactccgttatacatggat
ggggaagaagaggatgaggtgattatttttaagccgttgatgactgataggcactttgat
gtcaatgctcttgagttgtctacttttgagattccaagtaatgcctctcaaggcaacatg
gagagctgtataggatctgttcctgtctcttgtgattcttattatctgtcaaatggtttc
aatagaagcacagttggccctaaatctcctgcttctgttgcccccctgcattttcaagca
ttgcagcctaccgcttcaaaatggcctgccaaatctgaaggatccatttccaatgggctg
aacaacttcaatttggtagggtatgggcttgttatgaagagtgggttgcaagaacaccaa
gtagttttgcagccttctgcagtttcacttcctcttccactctttgtgaaccctagtgct
ggtaacctgctacccgctaaggttcctgatactgtagtacacttgaaatctgagccagtc
atgtcttctgtctctggttttgacagtctgtccttgaaggcatcatcagtgttcccagct
agttcaagattgaatccagtaagccgtcctgttcatcaccttggtcctccacctggattt
agctctgttcctcctaaggccaaatgtgagatcttatctggcattggtcaggagaattat
gattttcatatggatgattatagctggcttgatggatatcagccaccgtcatcagcaaaa
gcaactgtgtttaacaattctatcaatcaccctgaacaatcttgtcatcatacgacagcg
aatgatggcctgacaggaacaagaatgtttccatttcctggcaagcaactccaaacattt
cctatgaaaattgaaagccagaatggctcgttgaaccgccagcttcctgatcatctgaaa
ctataccaggagtggcaacagcagcaacttgcaaaaataggctag |
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