Populus trichocarpa (black cottonwood): 7479720
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Entry
7479720 CDS
T01077
Name
(RefSeq) 26S proteasome regulatory subunit S10B homolog B
KO
K03064
26S proteasome regulatory subunit T4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03050
Proteasome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03050 Proteasome
7479720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pop03051
]
7479720
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Regulatory particles
PA700 (19S proteasome)
ATPase subunits
7479720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Prot_ATP_ID_OB_C
AAA_lid_3
AAA_16
AAA_5
AAA_2
RuvB_N
AAA_22
nSTAND3
PRS7_OB
DUF815
Prot_ATP_ID_OB_N
TIP49
AAA_7
IstB_IS21
Parvo_NS1
AAA_14
RNA_helicase
AAA_33
Mg_chelatase
AAA_18
Sigma54_activat
AAA_28
AAA_3
AAA_24
TsaE
NPHP3_N
AAA_11
NACHT
AAA_lid_PRS2_C
bpMoxR
TPR_MLP1_2
ABC_tran
ATPase
AAA_25
ATPase_2
ResIII
AAA_30
PhoH
AAA_19
NB-ARC
Motif
Other DBs
NCBI-GeneID:
7479720
NCBI-ProteinID:
XP_002300747
UniProt:
A9PB39
LinkDB
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Position
2:2066956..2070114
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AA seq
402 aa
AA seq
DB search
MATISNDGEDAARRRTAEADYRKKLLNHKELESRVRSTRENLKAAKKEFNKTEDDLKSLQ
SVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRAL
PREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVL
LYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIF
MDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR
PGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAG
MSAIRAERDYVIHEDFMKAVRKLNEAKKLESTAHYNADFGKD
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgataagcaacgatggagaagacgcagcgcgacgtcgtactgcagaggcggat
tatcgcaagaagttactcaaccacaaagagctcgaatccagagttcgatctacgagggag
aatttgaaagctgcaaaaaaagaatttaacaaaacagaagatgatttgaagtctcttcaa
agtgttggtcagattataggagaagttcttcgacctcttgacaatgaacgcttgattgtc
aaagcgagcagcgggccgaggtatgtggtaggctgccgtagtaaggtggataaggaaaaa
ctgacttcaggaactagagtggttcttgatatgacaacacttacgatcatgcgagctctt
ccacgtgaagttgacccagttgtttataacatgctgcatgaagatcctggtaatgtgagc
tactcagctgtgggtggtttatctgatcagattagagaattgagggaatctattgagcta
cctttgatgaaccctgagcttttcattagagtggggattaagcctccaaagggtgtcctt
ctgtatggacctcctggtactgggaagacattgctggctagggctattgcaagcaacata
gatgccaactttttaaaggttgtttcaagtgccatcattgacaaatacataggagaaagt
gctaggttgatccgagaaatgtttgggtatgcacgtgatcatcaaccctgcatcattttc
atggacgagatagatgcaattggtggacgccgttttagtgagggaacaagtgctgatcgt
gaaattcaaagaacattgatggagttgcttaatcaacttgatggatttgatcagcttggg
aaggttaaaatgataatggccacaaaccgccctgatgttcttgaccctgcacttcttcgt
ccaggaagattagacagaaaaatagagattccactaccaaatgaacagtcaagaatggaa
atccttaagatccatgctgctgggattgcgaagcatggggatattgattatgaggctgtt
gtgaaacttgcagagggttttaatggagctgatcttcgtaatgtctgcacggaagctgga
atgtcagcaatccgtgcagaacgtgattatgtcatccatgaagattttatgaaggccgta
cgaaaacttaatgaagcaaagaaactcgagtctaccgcgcactacaatgctgattttggc
aaagactag
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