Populus trichocarpa (black cottonwood): 7479742
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Entry
7479742 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''alpha isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7479742
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7479742
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7479742
03036 Chromosome and associated proteins [BR:
pop03036
]
7479742
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
7479742
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
7479742
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
7479742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
P2R3B_EF-hand
Motif
Other DBs
NCBI-GeneID:
7479742
NCBI-ProteinID:
XP_002302033
UniProt:
B9GRN6
LinkDB
All DBs
Position
2:complement(2353643..2361593)
Genome browser
AA seq
541 aa
AA seq
DB search
MDIDRVAGEEVCCLDAELLQLPEVSSFVLKENPQLAEDLFSQWISLSDTSRLVKTLIDDA
KAGNPINIPGSSTNASASGVNSLPSMFPAGSAPPISPRSSSGSPCTSKQKTSPSSLGSPL
KLVREPVREVIPQFYFQNGRPAASELKENCLSRINHLFRNDLDGLLIDEFKSVTKIVCKL
PSFFSYALFRKIDVDCTGIVTRDAFVKYWVDSNMLTLDVATQIFNILKQPDCKYLTQSDF
KPILRELLATHSGLEFLQNTPEFQERYAETVIYRIFYYINRSGNGCLTLRELKRGNLIDA
MHHADEEDDINKVIRYFSYEHFYVIYCKFWELDTDHDFLIDKENLVRYGNHALTYRIVDR
IFSQVPRKFTSNVEGKMCYEDFVYFMLSEEDKSSEPSLEYWFKCLDLDGNGVLTPIELQY
FYEEQLHRIECMAQEPVLFEDILCQIVDMIAPEREDYITLRDLKGCKLSGNVFNILFNLN
KFVAFESRDPFVIRQEREEPTLTEWDRFAHREYIRLSMEEDVEDVSNGSAEVWDESFEAP
F
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggatattgatagagtagcaggagaagaagtttgttgtttggacgctgaactgctacag
ctaccagaagtttcttcttttgtgcttaaagaaaatcctcaacttgccgaggacttgttc
tctcagtggatttcgctttctgacacctcccgactggtgaaaactttgattgatgatgca
aaagctggcaatcccatcaacatccctggtagctctactaatgcgagtgctagtggggtc
aattcattgccttctatgtttcctgctggtagtgcacctccaatttcaccaagaagttca
tctggttctccatgcacgtctaagcagaaaactagtccttcttctctaggttccccgtta
aaattagtcagggaacctgtacgggaagttatacctcagttttattttcaaaatggtcgt
ccagcagcaagtgaactcaaagaaaattgtctttctagaattaatcatcttttcagaaat
gatctggatgggctactcattgatgaatttaaatctgttacaaagatagtttgcaagtta
ccatccttcttctcctatgcgcttttcagaaagattgatgttgactgcactgggatagtg
accagggatgcgtttgtcaaatactgggtggatagcaacatgctaacattggacgtagca
actcaaatattcaatattctaaaacagccagactgcaaatacctaactcagtctgatttc
aaacctattcttcgagaacttttggcaactcattcagggttggaattcttacagaatact
cctgaatttcaagaaagatatgctgaaactgtcatatacagaatattttactacatcaat
agatcaggaaatggctgtcttacactccgggagctgaaacgtggaaatcttattgatgca
atgcaccatgcagatgaagaagacgacattaacaaagttataaggtacttctcttatgaa
catttctatgtaatatactgcaagttttgggagctggatacagaccatgatttcttgatt
gacaaggagaatctcgtcagatatggtaatcatgcccttacctacaggattgttgataga
attttttcacaggtgccaaggaagtttactagcaatgttgaagggaagatgtgttatgaa
gattttgtttacttcatgctctcagaggaggacaaatcatctgagcccagccttgaatac
tggttcaagtgcttagatttagatggaaatggtgtgttgacacccattgaattgcaatac
ttctatgaggagcagctgcaccgaatagaatgcatggcccaggaacctgtgctatttgag
gatatcttgtgtcaaatagttgacatgattgcaccagagagggaagattatatcacactg
cgcgacttgaaaggatgcaaactttcaggaaatgttttcaatatccttttcaacctcaat
aagtttgtagcttttgaaagccgtgacccctttgtcattcgccaggagcgtgaggagcca
actttaacagagtgggatcgctttgcacatagagaatatatcaggctttcaatggaagaa
gatgttgaagatgtctcaaatggaagtgcagaggtttgggatgaatcatttgaggctcct
ttttag
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