KEGG   Populus trichocarpa (black cottonwood): 7479861
Entry
7479861           CDS       T01077                                 
Name
(RefSeq) ras-related protein RABF1
  KO
K07887  Ras-related protein Rab-5A
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04144  Endocytosis
pop04145  Phagosome
pop04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    7479861
   04145 Phagosome
    7479861
   04148 Efferocytosis
    7479861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7479861
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7479861
   04031 GTP-binding proteins [BR:pop04031]
    7479861
Membrane trafficking [BR:pop04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    7479861
 Endosome - Lysosome transport
    7479861
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   7479861
  Exosomal proteins of other body fluids (saliva and urine)
   7479861
  Exosomal proteins of colorectal cancer cells
   7479861
  Exosomal proteins of bladder cancer cells
   7479861
GTP-binding proteins [BR:pop04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    7479861
SSDB
Motif
Pfam: Ras Roc Arf RsgA_GTPase Gtr1_RagA GTP_EFTU MMR_HSR1 AAA_7 AAA_16
Other DBs
NCBI-GeneID: 7479861
NCBI-ProteinID: XP_002311076
UniProt: B9HLH6
LinkDB
Position
8:1955731..1959839
AA seq 201 aa
MGCSSSLPDRSTGRLGGLNNSESGGVVDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
TSKVTIGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE
TFNKAQYWVKELQKHGSPDIVMALVGNKADLQEKREVPTQDGIDYAEKNGMFFMETSAKT
ADNINQLFEEIAKRLPRPSST
NT seq 606 nt   +upstreamnt  +downstreamnt
atgggttgctcctcttctcttccagatagaagtactgggaggttgggcggacttaacaat
tcagagagtggtggagtggttgatgccaaaaacctacgtgtgaagttggttttgttaggg
gattctggtgttggtaaaagctgtattgttcttcgttttgttcgtggtcagtttgatcca
acatccaaggtaactattggagcttcatttttgtcacaaacgatagcattacaagattct
acaacagttaagtttgagatatgggatactgcagggcaggaaaggtatgctgcactggca
ccactatattataggggtgctgcagttgcagttattgtttatgatataacaagcccagag
acgttcaacaaagcacaatattgggtgaaggagctacaaaaacatggtagccctgatata
gtcatggctttagttggtaacaaggctgatcttcaagagaagcgagaagtacccactcaa
gatggcattgactatgcggagaagaatgggatgttctttatggagacatctgcaaaaact
gcagataatataaatcaactgtttgaggaaattgctaagcgacttccacgaccttcctca
acttga

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