Populus trichocarpa (black cottonwood): 7480183
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Entry
7480183 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7480183 isoform X5
KO
K21444
poly(rC)-binding protein 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7480183
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
7480183
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-GeneID:
7480183
NCBI-ProteinID:
XP_024461570
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Position
7:937125..943838
Genome browser
AA seq
1030 aa
AA seq
DB search
MQQQQQKHYRHKGPPRQPLIELQPGQVAFRVVCHVSKIGGLISHSSSVISPIWLEAGCLV
HCEEAVKGSEHRVIVVVGSASPEKKIAVGEGETVEVSGAQEAVVRVLERMWRVDGKKDGG
EYEGYCGLLANTSQIGAVVGREGRNIKRMKRTSGAHIWILPAPLCGLKEDQLIQITGSST
VAVKKAVIAVTSCLQDYPPPCEKDEVGLGLGAVRRRRSGSSGDPNAEFSPHSCSLLPTYS
ENIETDGDHKKPNEQSQVQFRMICSHGAAGIIIGKGGSVVRALQNQTGASIIFAPPITNS
DDRLVTVSALENLESSHSPAQNALLLVFDRSIEHDIERARSLGLIEEITVTATLLLPSNR
VSCLIGRGGRVDSEMIETTGADIQIMQADQFFDFASKNDAVVQITGEEKNVQNALFQVTC
KLRGNLLPTEMLNGLRAGSPYRRAGEITMLHQSAGESLDSNQETSFGKRVDQVRDTPSSF
LQLPQITGSSSVAIKKAVIDVTSCLQDCPPYEKDEVDLSLGAGRRRRSGSSGEPMCSLLP
TYSENIATDGDHKKPNEQSQVQFRMICSHGAAGSIIGTGGSIVRALQNQTGASISFAPPI
TNSDDRLVTVSALENLESSHSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLP
SNKVSCLIGRGGRVDSEMIETTGADIQILQGDQIFDFASKNDVVVQITGEEKNVQNALFQ
VTCKLRGNLLPTEMLNGLRAGSPYRRAGEITMLHQSAGESLDSNQETSFEKRLDQVRDTP
SSLLQLPQITGSSSVAIKKAVIDVTSCLQDCPPYEKDEVDLSLGAGRRRRSGSSGEPMCS
LLPTYSENIATDGDHKKPNEQSQVQFRMICSHGAAGRIIGTGGSVVRALQNQTGASIIFA
RPITNSDDRLVTVSALENLESSHSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATL
LLPSNKVYCLIGRGGRVDSEMIETTGADIQIMQGDQFFDLASKNDAVVQLSAPLPPRTIN
TSSSPVVVII
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagcagcagaagcattaccgtcacaagggtcctccacgacagccgttgatc
gagctccaaccgggtcaggttgcattccgagtagtctgtcatgtttcgaaaatcggtggt
ctcatcagccactccagctccgtaatatccccaatctggcttgaagccggttgccttgtt
cactgcgaggaggcggtgaagggatcggagcaccgggtgatagtggtggtggggtccgcg
tccccagagaagaaaatcgcggtgggtgaaggtgagacggtggaagtgtctggagcgcag
gaggcggtggttagggttttagagaggatgtggagggtggatgggaagaaggatggtggt
gagtacgagggttattgtggacttttggccaatacgtcgcagattggtgccgttgtgggt
agagaaggcaggaatatcaagagaatgaagagaactagtggggcccatatctggattctc
ccggctccactatgcggtttgaaggaagatcaattaattcagattacaggcagtagcact
gtggctgtaaagaaagcagtgattgctgtaactagctgccttcaagattatcctcctcca
tgcgagaaggatgaagtgggtttaggacttggagctgttaggagaaggagaagtggttcc
tctggtgatccaaatgctgaattctctcctcattcgtgttccctgctacccacatattct
gaaaatattgaaactgatggagaccataagaaacctaatgaacaatcacaagttcaattt
aggatgatctgctcccatggtgcagctgggatcatcataggcaagggagggtctgtagtc
agagctctgcaaaatcaaactggtgcttctatcatctttgctcctcctataaccaactcc
gatgaccgtctagttactgtttctgcattggagaaccttgaatcatcccactctcccgca
cagaatgcacttcttcttgtctttgatagatctattgagcatgacattgaaagagctcgt
tccttgggcttgattgaggaaattaccgtgacagcgaccctcctgctgccatcaaatagg
gtctcttgtttgattggaagaggaggtagggtagactcagaaatgatagaaacaactggt
gctgatatacagataatgcaagcggaccaattctttgatttcgcttcaaagaatgatgca
gtagtgcagattacaggtgaggagaaaaatgtacagaatgctctgtttcaagttacctgt
aaactgagggggaatcttttgcctaccgagatgctcaatggattgagggcagggagcccc
tatagaagagcgggggagatcactatgttgcatcaatcagctggcgaatctctcgattcc
aatcaggaaacaagctttggaaaaagagtggatcaagtacgtgatactccttcctcattc
ctgcagttgccacagattacagggagtagctctgtggccataaagaaagcagtgattgat
gtaactagctgccttcaagattgtcctccatacgagaaggatgaggtggatttaagcctt
ggagctggtaggagaagaagaagtggttcctctggtgaaccaatgtgttccctgctaccc
acatattctgaaaatattgcaactgatggagaccataagaaacctaatgaacaatcacaa
gttcaatttaggatgatctgctcccatggtgcagctgggagcatcataggcacgggagga
tccatagtcagagctctgcaaaatcaaactggtgcttctatcagctttgctcctcctata
accaactccgatgaccgtctagttactgtttctgcattggagaaccttgaatcatcgcac
tctcctgcacagaatgcacttcttcttgtctttgctagatctattgagcatgacattgaa
agagctcgttccttgggcttgattgaggaaattaccgtgacagcaaccctcctgctgcca
tcaaataaggtctcttgtttgattggaagaggaggtagggtagattcagaaatgatagaa
acaactggtgctgacatacagatattgcaaggggaccaaatctttgatttcgcttcaaag
aatgatgtagtagtgcagattacaggtgaggagaaaaatgtacagaatgctctgtttcaa
gttacctgtaaactgagggggaatcttttgcctaccgagatgctcaatggattgagggca
gggagcccctatagaagagcgggggagatcactatgttgcatcaatcagctggcgaatct
ctcgattccaatcaggaaacaagctttgaaaaaagattggatcaagtacgcgatactcct
tcctcattgctgcagttgccacagattacagggagtagctctgtggccataaagaaagca
gtgattgatgtaactagctgccttcaagattgtcctccatacgagaaggatgaggtggat
ttaagccttggagctggtaggagaagaagaagtggttcctctggtgaaccaatgtgttcc
ctgctacccacatattctgaaaatattgcaactgatggagaccataagaaacctaatgaa
caatcacaagttcaatttaggatgatctgctcccatggtgcagctggaagaatcataggc
acaggagggtctgtagtcagagctctgcaaaatcaaactggtgcttctatcatctttgct
cgtcctataaccaactctgatgaccgtctagttactgtttctgcattggagaaccttgaa
tcatcgcactctcctgcacagaatgcacttcttcttgtctttgctagatctattgagcat
gacattgaaagagctcgttccttgggcttgattgaggaaattaccgtgacagcaaccctt
ctgctgccatcaaataaggtctattgtttgattggaagaggaggtagggtagattcagaa
atgatagaaacaactggtgctgatatacagataatgcaaggggatcaattctttgatttg
gcttctaagaatgatgcagtagtgcagttatctgctcctctccctccaagaacaatcaac
acttcttcatcacctgtcgttgtcatcatctag
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