Populus trichocarpa (black cottonwood): 7480445
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Entry
7480445 CDS
T01077
Name
(RefSeq) RNA polymerase I-specific transcription initiation factor rrn3 isoform X1
KO
K15216
RNA polymerase I-specific transcription initiation factor RRN3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7480445
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
7480445
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRN3
Motif
Other DBs
NCBI-GeneID:
7480445
NCBI-ProteinID:
XP_002307198
UniProt:
B9H643
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Position
5:complement(7066742..7073254)
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AA seq
637 aa
AA seq
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MGVELTHQYTEYRAMEDQEEVEEGVSITDWDLVYHVRDALLSVKTGDRSSYHQLVGVLHH
RDRSAPDKVALLLTSLKALSGAVSYINDVDHVSLLQSIFGMSMWNCAPDVMDALLELIIC
LAASNGKYVDLCLDMLVNNFMPPMESDMLRHPRGQAKKDQVLPRVHTGLEVIVDLVPLAA
LKLSTNVVQKRPMFFRKDFNMDRLKCRMEIYLKNMLMLEGGAIREFVGHSMLVEVVNMML
ELDVAIGWDELLRDDPSKGIFTMELEDEEEEAGDDGQANDGELPSTLTLRNLGKNVTADL
LDSLMIQFLEHLEACADKKRLSEVFETLLSSFMATILNTYKSKFSQFTIFYACALDPENC
GVKFAQTLVDLFISTCNPPVTRMSAVAYLSSYLARGKFLSAAFVMNMLKRLVDWCLRYCE
EQDSDMNPKAHQVFYSACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIEPILKHKLGPLEV
CLPSIVNEFLKQAKAAHLFTISKAFIFEDLLESDLSRDFGGLERLDMFFPFDPCLLKKCD
RGFIRPNFIYWNHVKTTYDDDEEDSSDEDIADDFGVLNEENFMEEGMARSFDQDIDLDEF
DYVMNKMSITPKNTSGFHFGGERMPSKIRPSTSPESL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttgagttaacccatcaatatacagaatatagagcaatggaggatcaagaggag
gtggaggaaggtgttagtattactgattgggatttagtttatcatgttagagatgccctt
ttatctgtcaaaacgggtgacaggagcagttaccaccagcttgttggggttttgcatcac
agagatcgttctgctcctgataaagtggctttgcttttgacgagtctaaaggcactatct
ggggcagtttcttacataaacgacgttgaccatgtctcacttcttcaatctatttttgga
atgagcatgtggaactgtgcgcctgatgtgatggatgcattgcttgaacttataatatgc
ttggctgcttcaaatggaaaatatgttgatttatgtcttgatatgcttgtaaacaatttt
atgccaccgatggaatcagatatgctccggcatccacgtggtcaggcaaaaaaggaccaa
gttcttcctcgtgtgcatactggtctagaagttattgttgatttggtgcctttggcagcc
ttgaaattgtctacaaatgttgtacaaaagaggcctatgttcttcaggaaggatttcaac
atggatcgtctaaaatgtcgcatggagatatatttgaagaatatgctaatgttggagggt
ggtgctattagagaatttgttgggcacagtatgctcgtggaagtggtgaatatgatgcta
gaattggacgttgcaattggttgggatgaattgttaagggatgatcctagtaaaggcatc
tttacaatggagttagaagatgaggaagaggaagctggtgacgatggtcaggcaaatgat
ggtgagcttccaagcacgttaactctcaggaatttaggtaaaaatgtcactgctgacttg
ctggatagcttgatgatacaatttctcgagcatcttgaagcctgtgcggacaagaagcgt
ttgagtgaggtatttgaaactcttttatcttcattcatggcaactattttgaacacgtac
aagtcaaagttttctcagttcacgattttctatgcctgtgcacttgatcctgaaaattgt
ggtgtgaaatttgctcaaacactcgtggatttgttcatatctacttgcaacccaccggtt
acgaggatgagtgctgtggcttatctttctagctatttggctcgtgggaagtttctatct
gctgccttcgtcatgaacatgttgaaaaggctggtggattggtgtttgagatattgtgaa
gagcaggatagtgacatgaatccaaaagcacatcaagttttctattctgcatgccaggga
attatgtatgtgctctgctttcatatgaaatcaataatgaatgttcctaccctcaaatca
cagctcctcctcatgcctatagagccaatattgaagcacaaattggggccattggaggtc
tgcttgccatcaattgtaaatgagtttctcaaacaagctaaagcagcacatctgttcacc
atctccaaagcattcatcttcgaagatttgctggaatcagatctttctagggattttggt
gggctggagaggctggacatgttcttcccatttgacccatgtttgctgaagaaatgtgac
agaggtttcatccggccaaactttatatactggaaccatgtcaaaactacctatgatgat
gatgaggaagacagcagtgatgaagacattgctgatgattttggggttctgaatgaagag
aatttcatggaagaagggatggcaaggagttttgatcaagatatcgatcttgatgaattt
gactacgtcatgaacaagatgtccatcacacctaagaacacgtcaggtttccactttggt
ggtgaacgaatgccttcaaagataagaccctcaacaagtccagagtccttgtga
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