Populus trichocarpa (black cottonwood): 7480454
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Entry
7480454 CDS
T01077
Name
(RefSeq) ubiquitin domain-containing protein DSK2b
KO
K04523
ubiquilin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7480454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7480454
03051 Proteasome [BR:
pop03051
]
7480454
Membrane trafficking [BR:
pop04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
7480454
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
7480454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
Rad60-SLD
UBA
STI1-HOP_DP
Dsc3_N
UBA_7
TBK1_ULD
Ubiquitin_2
Ubiquitin_4
Rad60-SLD_2
UN_NPL4
HEAT_HEATR1
OTU1_UBXL
Ubiquitin_5
RAWUL
Crinkler
UBX
XPC-binding
Motif
Other DBs
NCBI-GeneID:
7480454
NCBI-ProteinID:
XP_002306425
UniProt:
B9H660
LinkDB
All DBs
Position
5:7233831..7238468
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AA seq
549 aa
AA seq
DB search
MGGGNGDVEGGSNDTDGGDDEVNVNIRCSNGSKFTVKISLSSTVDSFKQLIANQCDVPSD
QQRLIYKGRILKDDQTLQSYGLEADHAVHLVRGFAPSAPVNATAATNTGGSNTAPTNTRA
AGSTDDGELGGSGFGSLFPGLGLNGLGGSGGLLGAGLPEFEQVQQQLTQNPNIMRDIMNT
PVVQNLMNNPEIMRNLLMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMM
RNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGNAGGDSANPFAALLGTQTGNQ
ARDGSTNLSTTSSETTTGSPAPNTNPLPNPWSSGGAQTNTTRSNPTSDTRPQAPTGLGGL
GLPDLDNMFSAMPDAAMVSQLMQNPAISQMMQSFMSSPQYMNQILGMNPQLRSMLDSNPQ
LREMMQNPEFLRQLTSPETMQQLLTFQQSLMSQLGQRQSTLAQGQTGAGTGTTNNAGLEM
LMNMFGGLGAGSLAVPNRSNVPPEELYATQLSQLQEMGFFDTQENIRALIATAGNVHAAV
ERLLGSTGQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcggtaatggagatgtagaaggaggcagcaacgataccgacggtggagatgac
gaagtcaatgtcaacatcagatgttccaacggctcaaaattcactgtcaaaattagcttg
tcgtcaaccgttgattcgtttaagcagcttatcgcgaatcagtgtgatgtgccgtctgat
caacagcgattgatttataagggtcggatcttaaaggatgatcaaactctacaaagctat
ggcttggaggcagatcatgctgtccacttggttcgtgggtttgcaccatctgcaccagtc
aatgcaactgctgcaaccaatactggaggttcgaatactgctccgaccaatactagagct
gctggctctactgatgatggagaactcggaggatctggttttggatcactctttccagga
cttggtttaaatggcttggggggcagtggtggtttgcttggagctggacttccagagttt
gaacaagtgcagcaacagctgactcagaaccccaacatcatgagagacataatgaacacg
cctgttgttcagaacctaatgaataaccctgaaatcatgcggaacttgctaatgaacaac
cctcaaatgcgtgaaataattgaccgaaatcctgagctggcacatatacttaatgatcct
agcacacttcgtcaaacacttgaagctgcacgaaacccagagctcatgcgtgagatgatg
cgcaacacagatagagctatgagcaacattgaatcttctcctgagggattcaacatgctg
aggcgcatgtatgaaactgttcaagagccatttcttaatgcaactacaatggctggaaat
gctggaggcgatagtgcaaacccatttgcagctcttttagggacccaaactgggaaccag
gccagagatggatcaactaatttgtcaactaccagttctgaaaccaccactggttctcct
gctccaaataccaacccacttcccaacccttggagcagtggaggtgcccaaactaacacc
acaaggtcgaatcccaccagtgatactaggccacaggcacctactgggctaggtggactt
ggtctccctgatcttgacaatatgtttagtgctatgccagatgctgctatggtgagccag
ttgatgcaaaatccagctatttcacaaatgatgcaaagcttcatgtccagccctcagtac
atgaaccagattcttggtatgaatccccaactccgtagcatgcttgattccaatcctcaa
ctaagagaaatgatgcaaaacccagaatttcttcgtcaattgacgtctcctgagacaatg
cagcaacttttgactttccagcaatctcttatgtctcaacttggtcagcgacagtcaacc
ctggcacaaggtcagactggtgctggtacaggaacaaccaacaatgctggtttggagatg
ttaatgaatatgtttggtgggcttggggctggcagcctggctgttcccaacagatcaaat
gtgcccccagaagaactatacgcgacccagttgtcacagcttcaagaaatgggtttcttt
gacacacaagagaatatacgagcactaattgcaactgcagggaatgtccatgctgcagtg
gagcgacttttgggaagcactggtcaatag
DBGET
integrated database retrieval system
