Populus trichocarpa (black cottonwood): 7480697
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Entry
7480697 CDS
T01077
Name
(RefSeq) RAN GTPase-activating protein 1
KO
K14319
Ran GTPase-activating protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7480697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7480697
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
7480697
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WPP
LRR_6
LRR_1
DUF7885
DUF5423
LRR_14
Motif
Other DBs
NCBI-GeneID:
7480697
NCBI-ProteinID:
XP_002300846
UniProt:
B9GSN7
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All DBs
Position
2:3581688..3584713
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AA seq
543 aa
AA seq
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MDSATQTLQHRISVKLWPPGQSTRLMLVERMTKNFITPSFISRKYGLLSKEEAEEDAKKI
EEVAFAAANQHYEKQPDGDGSSAVQIYAKESSRLMLEVLKRGPRIQEDEEVAATADKGAA
TLANVFDISGGRRAFISGEEAEEVLKPLKVPGNLYTRICFSNRSFGLEAAHVTEPILLSI
RDQLTEVDLSDFVAGRSESEALEVMNIFSSALEGCNLRYLNLSNNALGEKGVRAFEKLLK
TQNNLEELYLINDGISEEAARAVCELIPSTEKLKVLHFHNNMTGDEGAVAIAEMVKRSTA
LEDFRCSSTRVGLEGGVALAEALGSCNHLRKLDLRDNMFGVEAGIALSRSLFAFADLTEA
YLSYLNLEDEGAEALANALKECAPSLEVLDMAGNDITAKGASSLAACIAAKQFLTKLNLS
ENELKDEGAILIAKAIEVGHGQLNEVDLSINAIRRAGARLLAQAVVDKPGFKSLNINGNY
ISDEGIDEVKDIFKGLPNVLENLDENDPDGEDLDEDAKEEDEDTDNEDELESKLKGLEIK
HEE
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggattctgcaacacagactttgcagcaccgcatatctgtcaaattgtggccccctggt
cagagtacaaggctaatgcttgtagagcggatgacaaagaatttcattaccccatccttt
atctccagaaagtatgggttgttgagcaaagaggaggctgaggaggatgccaagaaaatt
gaagaggtggcttttgcagctgcaaaccagcactatgagaaacagccggatggtgatgga
agttctgctgtgcagatatatgctaaagagtctagtaggcttatgttggaggttctcaaa
aggggccccagaatacaggaggatgaagaggtggcagcgacagccgataaaggtgcggct
actcttgcgaacgtgtttgatatatctggtggccggcgggcatttattagtggagaggag
gctgaggaagttttaaaacccctcaaggtgccaggaaacttgtatactaggatatgtttc
agcaatagaagctttggcttggaggcagcccatgtcacagaaccaatcttgttgtccata
agggatcaattgacagaagtggacctttcggactttgttgcaggaagatcggaatcagaa
gctcttgaagtgatgaatatattttcttcagccctagaaggctgtaatctgaggtatctg
aacctttcaaacaatgccttaggtgaaaagggtgtcagggcttttgagaaacttctcaag
acccagaataatttggaggagctttatttgataaatgatggtatctcggaagaagctgca
cgtgcagtttgtgagctgattccttcaaccgagaagctcaaggtccttcattttcacaat
aacatgactggagatgaaggtgcagttgctattgctgagatggtgaaacgttccactgcg
ctggaggattttcgatgttcttcaacaagggtgggcttggaaggtggtgttgccctagct
gaagctcttggatcatgtaaccatttaaggaagcttgatctacgtgataatatgtttggt
gtggaagctggtattgctctgagcaggtctttatttgcatttgcagaccttactgaagct
tacctcagttatcttaatttggaggacgagggggcagaagcacttgctaatgctttaaag
gaatgtgcaccttcattggaagttctggatatggctgggaatgacattacagccaaaggt
gcttcttctttggctgcctgcattgcggcaaaacaatttctcactaaattaaatctttct
gagaatgaactgaaggatgaaggtgctattttgattgccaaggcaattgaagtgggccat
ggccagctaaatgaagttgatttgagcattaatgcaattagacgagctggggcaaggctc
ctggcacaggctgttgtggataagcctggatttaaatcgttaaatatcaatggtaattac
atatctgatgaagggattgatgaggtgaaggatatatttaagggtttgcctaatgtgctt
gaaaatttggatgagaatgatccagatggagaagatcttgatgaagatgcaaaagaggag
gatgaggatactgacaatgaagatgaattggaatcaaaactcaagggactagaaattaag
catgaagagtag
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