Populus trichocarpa (black cottonwood): 7480701
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Entry
7480701 CDS
T01077
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7480701
09124 Replication and repair
03420 Nucleotide excision repair
7480701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7480701
03036 Chromosome and associated proteins [BR:
pop03036
]
7480701
03400 DNA repair and recombination proteins [BR:
pop03400
]
7480701
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
7480701
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
7480701
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
7480701
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
7480701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
AAA_11
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
7480701
NCBI-ProteinID:
XP_002300852
UniProt:
B9GSP7
LinkDB
All DBs
Position
2:3653797..3659223
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
ISKPQGAIKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGPAAKILAIGLSSRKNLCVNPN
VLEANNRDSVDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDL
RAYGKEKGWCPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPG
SDSWLSNPALPDDILREAVPGNIRRAEHFLHVLRRLLQYLTVRLDTENVEKESPISFVAS
INNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYSRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGIVCFFV
SYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKTGSSGKKTLLSQEDLEKMDDSGKQAMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaaatcgaggacgtgaccgtatacttcccgtacgatcacatatacccggag
caatactcctacatggtggagctaaagcgtgcactagacgctaaaggtcactgcctgctt
gaaatgcctacaggaacgggaaagacaatagctttactatcattaatcacaagctacact
atctctaaacctcaaggcgcaatcaagctaatttactgcactcgcacagttcacgagatg
gagaaaaccctagccgaattgaagttattgcataattatcaagtcaagcacctcggccct
gctgccaagattttggcgattggattgtcttcgaggaagaatttgtgtgtaaatcctaat
gttttggaagcgaataatagggattcggttgatgctgcgtgtcggaaaaggactgcgagt
tgggttagggctttggccgcggagaatccgaatgtcgagacttgtgagttttttgaaaat
tacgagagggctgcttctggtgctgttttgcctcctggggtttatactcttcaggatcta
agggcatatgggaaagagaaagggtggtgtccatattttttggcaaggcatatggtgcag
cttgcgaatgtagtggtttatagttaccaatacttgcttgatccgaaggtggctgggatt
atatccaaggaaatgcagaaggaatctgttgttgtgtttgacgaggcgcataatatcgat
aatgtatgtattgaagcacttagtgttagtgtgaggaggcaaacacttgatggagcatca
agaaatatctcaaggattgaacaagagattaacaggttcaaggccactgatgctaataga
ctgcgtgatgagtacaagcggcttgttaatggtttggcattaagtggaaacttacctggc
tcagattcctggctttcaaatcctgccttgcctgatgatattctgagggaagcagttcct
ggaaatattcgccgggcagaacattttttgcatgttttacgaagattgctccagtatcta
acagtgcggttggatactgagaatgttgagaaggaaagccctattagctttgttgcctcc
ataaacaaccaagctggaatcgaccagaaaacactaaagttttgttatgatcgcctacat
tcacttatgttgacgttggaaataactgatacagatgagttcttgcatgtccaaacaata
tgtgactttgcaacactagtggggacatattctcgtggattttccatcataattgaacct
tttgatgagagaatgccacatattcctgaccctgtattacagctcagttgccatgatgct
tctcttgccataaagcccgtgtttgaccggtttcagtcagtcgtaattacatctggaact
ctaagcccaattgatctctatcctcgacttcttaatttccaccctgttgtcagtcgaagc
tttaagatgtccttgacaagagattgcatatgtccaatggttctcactcgtggaagtgat
caacttccagtgagtaccaaatttgatatgagaagtgatcctggtgttgtaaggaattat
gggaagctattggtggagatggtttctattgttccagatggaattgtgtgcttttttgtg
agttattcgtacatggatgggattatcaacacctggaatgaaagtggacttctaaaggaa
ataatgcaacataagcttgtctttattgagacccaagatgtggtagaaactactttggct
cttgacaactatcgtagggcttgtgattgtgggagaggtgctgtttttttctctgttgcc
aggggaaaagtagctgaaggaatagattttgatcggcattatggcagactagtgatcatg
tttggtgttcctttccagtacaccttaagcaagatactacttgcacggttggagtatcta
agggacacatttcagattaaggaaggggatttcctaacatttgatgccctgagacaagct
gctcaatgtgtgggccgagtgatccggtcaaaggctgattacggaatgatgatatttgct
gacaaaaggtatagccgtcatgacaagcgctctaaattgcctggttggattttgtctcat
ttacgtgatgcacacctgaatttgagcactgacatggcactgcatatagcacgcgagttt
cttcggaagatggctcaaccatatgacaagactggttctagcggtaagaaaaccctgtta
tcacaagaagatttggaaaagatggatgacagcggtaagcaggcgatgctgtattaa
DBGET
integrated database retrieval system
