Populus trichocarpa (black cottonwood): 7480732
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Entry
7480732 CDS
T01077
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7480732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7480732
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
7480732
U7-dependent histone pre-mRNA processing factors
7480732
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
partial_CstF
Motif
Other DBs
NCBI-GeneID:
7480732
NCBI-ProteinID:
XP_024452015
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Position
2:complement(4233682..4239066)
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AA seq
545 aa
AA seq
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MASSSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEE
TALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPRLAANNDPQKQAGGPAILE
EPAQHQPIGLHIAITAATVMAGTLGGAQTVMQSNQNGLQSQPALASDPLTLHLAKMSRNQ
LNEIMSELKGMATQNREAAHQLLLGKPQLSKALFQAQIMLGMVTPQVLQLPNIRQSTGQP
ALSSLQDSQQVQRPAVPNLPGLPPTAQRMQLGLGQFSAGPQPSVQPQKSLVHNQFSATPQ
PSVQAQTQIPHHVNNHVPHHATLLGQSAPLPAVLPSVRPPVQMANSAPLNQQMQPSLVQH
TRQVGNTNARHNPQVVLPNKAMQSSLLSRPPATGSFQSGLSVSSGLSDAANADRSTLRSN
AYLNMQTSTAHDSKEPVNRPSKVLKLDDGRSMSVPMGGSNLFSATGSGPSQAPAVNSVPP
NPLPRPEDLQHSGKQAPQLPADIESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALLRD
QMQPS
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcttctcagcatcgctgcgtttttgttgggaatataccgtacgatgcaacc
gaggaacagctaattgaaatctgcagagaggttgggcctgttgtgtccttcagattagta
attgatcgagaaactgggaaacctaaaggttatggattctgtgaatataaggatgaagag
acagcgctaagtgctcgtcgtaatcttcagggttatgagatcaatggccggcagttacgg
gttgattttgctgaaaatgacaaaaatgctgacagaaaccgagaacagggtcgcgggggt
cctcgactggctgcaaataatgatccccagaaacaagcagggggtccagcaattctggag
gagccagctcagcaccagccaattggtctccacatagccattactgctgcaactgtcatg
gcaggaactttaggtggtgctcagactgtcatgcagtcaaatcaaaatggtttacagagt
cagccagcactagcaagtgaccccctgactcttcatctggcaaaaatgtctagaaatcaa
ttgaatgaaatcatgtctgagctaaagggaatggctacacaaaacagggaagcagctcac
cagctgttacttggaaaaccacagctgtcaaaagctctttttcaggcacagataatgctt
ggaatggtgactccacaagtgttgcagctcccaaatattcggcaatcaacaggtcaaccc
gctctatcttcattacaagattctcaacaggttcagcggccagcagttccaaatcttcct
gggttaccccctactgcgcagaggatgcagttgggcttaggtcaattttctgctggtcca
caaccatctgttcagcctcagaagtctctggttcacaaccaattttctgcaaccccacaa
ccatctgttcaagctcaaacacagattccacatcatgtcaacaaccatgttcctcatcat
gccacattgttagggcagtctgcgccacttcctgctgtgcttccttctgttagaccacct
gttcagatggcaaactctgcacctctgaaccaacaaatgcaaccttcattggtacaacat
acaagacaggttggaaatacgaatgctaggcacaaccctcaggtggttcttcccaataaa
gctatgcaatcttctcttttatcccgtcctccagcaacaggctcctttcagtctggcctc
tcagtatcatcgggcctttcagatgcagcaaatgctgataggtctactctcagaagtaat
gcatatttgaacatgcaaacaagcacagctcatgattctaaagaaccagttaatcgccct
tcaaaggtgttaaaattagatgatggaaggagcatgtctgtccctatgggaggttctaat
ttgtttagtgccactggatctggaccatcccaagcacctgcagtcaattcggttcctcca
aatccacttcccaggccagaagatttgcagcattctgggaaacaagctcctcagcttcca
gcggacatagagtctgccttactgcagcaagtgctgaacctcacaccagagcagttgagt
tcattgccacccgatcagcaacagcaagttattcagctccaacaggcacttctgcgagat
cagatgcaaccatcataa
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