Populus trichocarpa (black cottonwood): 7480772
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Entry
7480772 CDS
T01077
Name
(RefSeq) RHOMBOID-like protein 10, chloroplastic
KO
K27605
rhomboid-like protein, plant [EC:
3.4.21.105
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7480772
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.21 Serine endopeptidases
3.4.21.105 rhomboid protease
7480772
Peptidases and inhibitors [BR:
pop01002
]
Serine peptidases
Family S54: Rhomboid family
7480772
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Gene cluster
GFIT
Motif
Pfam:
Rhomboid
DER1
Motif
Other DBs
NCBI-GeneID:
7480772
NCBI-ProteinID:
XP_002304070
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Position
3:complement(2016637..2019951)
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AA seq
325 aa
AA seq
DB search
MMGSSLSASPQPLWRVPIQPLNLITTVASLRFGFLVHSSFKNISHLYHVPRLKDVWHEKA
SQLQGIDVLQFSNDVFASTCSSCLCFFNGGGARKGFRNEGSPNLETSGRSSFNGRQWTNI
LLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLATSSVLHANIGHLMVNCYSLNS
VGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGASGAIFGLVGSLAVFVIRHRR
MIGGGKEDLQNIAKVIFLNMMIGLLTKGIDNWGHLGGLLGGVATSWFVGPAWQYGPQSHD
GRRVFVDKAPIRYLTNRKTEPKNFG
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgatggggtcatcactatcagcttctccgcagccgttgtggcgggtcccgatacaaccc
ttgaatctcattacaaccgtcgcttctctccgctttggcttccttgtgcactcctccttc
aagaatatctctcatctctatcatgttcctagattgaaggatgtgtggcatgaaaaagcc
tcccagttgcagggaattgacgttcttcaattttcaaatgatgtctttgcatccacatgt
tcatcttgcttgtgcttcttcaatggaggaggggctagaaagggctttagaaatgaggga
tcgccaaacttggagacatccgggagaagttcatttaatggaagacaatggactaatatt
cttctcgctatcaatatcttagtttattttgcgcaaattgctacccgaggaaagctgttg
ttctggggtgctaaggttaacagtcttattgacaagggacaattttggaggctggccact
tcttctgttctgcatgcaaatattgggcacctcatggttaattgctattctttgaattct
gttggtcctaccattgagaatcttagtggcccaagaagatttattgcagtttacctcacc
tctgcaattgcaagttcagcaatgagttactggttctgcagagcacctgcagtcggtgcc
tcaggagccatctttggattagttggatctcttgcagtgtttgtcataagacacagaaga
atgatcggaggtggcaaagaagatctacagaacatagctaaagtgatattcctcaatatg
atgatcggtttattaacaaaaggcattgataactggggacatctgggaggcttgcttggt
ggagttgccacatcttggtttgttggacctgcatggcagtatggcccccagtcgcatgat
ggtcgaagagttttcgtagacaaggcaccaatcaggtatctgaccaacagaaagacagaa
ccgaagaactttggttaa
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