Populus trichocarpa (black cottonwood): 7480809
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Entry
7480809 CDS
T01077
Name
(RefSeq) eukaryotic initiation factor 4A-8
KO
K03257
translation initiation factor 4A
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7480809
03012 Translation factors [BR:
pop03012
]
7480809
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7480809
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7480809
mRNA cycle factors
Stress granule specific factors
7480809
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
eIF-4
7480809
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
7480809
Exosomal proteins of bladder cancer cells
7480809
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
DUF8050
Motif
Other DBs
NCBI-GeneID:
7480809
NCBI-ProteinID:
XP_002304185
UniProt:
A9PD17
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All DBs
Position
3:complement(4948912..4951951)
Genome browser
AA seq
413 aa
AA seq
DB search
MAGLAPEGSQFDSKQYDAKMNDLLANDGQDFFTSYDEVYDTFDSMGLQENLLRGIYAYGF
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL
AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP
DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVR
ILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR
SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQKFYNVVIEELPSNVADLL
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtttggcaccagaagggtcacaattcgattctaagcaatatgatgccaaaatg
aatgatttgctcgcaaatgatggacaagatttcttcacatcatatgatgaggtttatgac
acttttgattcaatgggactgcaagagaaccttttgaggggcatctatgcctatggtttt
gagaagccatctgcaatccagcaaagaggaattgttccattctgcaagggccttgatgtg
attcagcaggctcagtcaggaactgggaaaacagcaaccttctgctctggtattctccag
caacttgattatggtctagtgcaatgtcaagctttggtccttgcgcccactagggaactt
gcacaacagattgaaaaggttatgcgggcacttggtgattatcttggcgtcaaagttcat
gcttgtgttggtggcacaagtgttcgtgaggaccaacgcattcttcaagctggagttcat
gttgttgttggcactcctggtcgtgtgtttgatatgttaagaaggcagtcacttcgtcca
gattacattaaaatgtttgtcctggatgaggctgatgaaatgctgtcccgtggttttaag
gatcagatctacgatattttccagttgctgccatctaaagttcaagttggtgtgttctcc
gctactatgccacctgaagcccttgagatcacaaggaagttcatgaacaagcctgtgagg
atcttggttaagcgtgatgagcttacccttgaaggtatcaaacagtttcatgtcaatgtt
gataaggaggagtggaagcttgaaactctatgtgatctatacgagaccctagccatcact
cagagtgttatttttgttaacacccgccgcaaggttgactggctgacagacaagatgcga
agccgtgaccacacagtctcagctactcatggagatatggaccagaacactcgtgatatc
attatgcgagaattccggtctggctcttctcgagttctcatcacaactgatctcctggcc
cgtggaattgatgtgcagcaagtgtcccttgtcataaattatgatctgccgactcaacca
gaaaactaccttcaccgtattggacgaagtggacgttttggaagaaagggtgtcgccatt
aactttgtgacaagggatgatgacagaatgctgtttgatatccagaagttctataatgtg
gtcatcgaggagcttccatctaacgtggctgatctcctgtga
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