Populus trichocarpa (black cottonwood): 7480949
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Entry
7480949 CDS
T01077
Name
(RefSeq) mRNA export factor GLE1 isoform X1
KO
K18723
nucleoporin GLE1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7480949
03015 mRNA surveillance pathway
7480949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7480949
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7480949
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GLE1
Motif
Other DBs
NCBI-GeneID:
7480949
NCBI-ProteinID:
XP_024463075
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Position
8:12707982..12718270
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AA seq
641 aa
AA seq
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MGAFKLALRCPQKVHDIVVDPEPNWSFESLSSELHSLEKKLHDSCSVPVPFTKVQSREFW
NRKGVKRSPMAFVMSLSNEETELSESEREEDHDLSMVTAKRFNCDDLYMSDSDSSDYELA
FDAQSYLMDEVGLVESALFERSHEHHLQVQQEDIRNQLSAIETELMTEQEKSASAFARIE
KYREARKELERKLDTHYQRKIAEALDNHLTAIQRDHELKSQIEERRIRSDAAHEEAKRKE
RAFHEERSRQERARAEAEAKLRFEEAKMAAVEAERRAAKEAAEKEATEASKRIDAVASQQ
EAAKPQLSADSSNMNLQPQGSGSNRTKKSQTTGDVVRAAQTALTLEQGRLLKLKELEEAN
RTLIMTSNMDFSNHERHISRLIRQIRGIKENVRVKASELVKILKNPSCPQSISVAAFAKK
VVSHCESPDNAVFACGHVIVLVTSQVPQAMDLLLAEFHRACIYTVPKHIVYSKSAFESKE
AYYKDIGHREDGGKLESVKDYLKRLESYMKLYGALVQTEVQGVPNIHGPKEGWAWLARFL
NVLPANMYTAVALNAFLQTAGFVLFRKYKSQFTKMLHIILNDFLNALREREDSELNPIIL
EIQSYIEDNKFLQEPEGRSLQGQLLSSVMVPESEPSRGYYY
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgggagcttttaaattggcactacgctgtccacagaaagtgcatgacattgtagttgac
cccgaacccaattggagtttcgagtctctttcatcagagctccattcacttgaaaagaag
ctccatgactcgtgttcagttcctgtgcctttcaccaaagttcaatctcgagagttttgg
aacaggaagggtgtgaagagaagtcccatggcctttgtcatgagcttgtccaatgaagag
actgagctttcagaaagcgagagggaggaggatcatgatctaagtatggtgactgcaaaa
cggttcaattgcgatgatctttatatgagtgacagtgacagttctgattatgagttagct
ttcgatgctcagtcctacttgatggatgaagtagggttagttgaaagtgctctttttgag
cgaagtcacgagcatcatcttcaagtgcagcaggaggatatcaggaaccaactttcagca
atagagacagaattaatgactgagcaggaaaaatctgcatctgcatttgctcgaattgag
aagtatagggaagcaaggaaggaactggaaagaaaacttgatactcactatcaacgcaaa
attgcagaggcacttgacaatcatttaactgccattcagcgagatcatgaactaaaatca
caaatagaagaaaggagaataagaagtgatgcagctcatgaagaggccaagagaaaggaa
agggcttttcacgaggaaagatcacggcaagaaagagctagagcagaagcagaggccaaa
cttagatttgaggaagcaaaaatggctgctgtagaagcagagaggagagcagcaaaggaa
gcggctgaaaaggaagctactgaagcctcaaaaaggatagatgctgtagcctcgcaacag
gaggctgccaaaccccaactaagtgctgactcttcaaatatgaaccttcaaccccagggg
tctggatctaatagaactaagaaatcacaaacaacaggtgatgttgtgagggctgcacaa
actgctctgactttagagcagggaagattgctaaagcttaaagagcttgaagaagcaaac
cggacattgataatgacttccaatatggattttagcaaccacgagaggcatatttctagg
ctgatcagacaaataagggggataaaagagaacgttagagttaaggcaagtgagcttgtt
aagattttaaagaatccttcctgtcctcagtcaatcagtgttgcggcatttgcaaagaag
gttgtttcccattgtgaaagtcctgataatgctgtttttgcgtgtggacacgtcattgtt
cttgttacttcacaggtcccacaagcaatggatcttcttcttgctgagttccatagagct
tgcatctacactgtcccaaagcacatagtgtactcaaagtcggcctttgaatcaaaagag
gcttactataaagacattggacatcgagaagatggtgggaagcttgagagtgtgaaggat
tatttgaaacggttagaatcttacatgaaactgtatggggctctggttcagacagaagtg
cagggtgtcccaaacattcatggtccaaaagaaggttgggcatggcttgcgaggttctta
aatgttctccctgccaatatgtatactgctgttgcattgaatgccttcctgcaaacagca
ggatttgttctcttcagaaaatacaaatctcagtttacgaagatgctccacataatctta
aatgactttctaaatgcattgagagaacgggaggattcagaactaaatccaataattcta
gaaattcagtcttacatagaggacaataagttcctccaggagcctgaaggaaggagcttg
cagggtcaattgctatctagtgtcatggtacccgagtcagaaccaagtagaggttactac
tattga
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