Populus trichocarpa (black cottonwood): 7481418
Help
Entry
7481418 CDS
T01077
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7481418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7481418
03009 Ribosome biogenesis [BR:
pop03009
]
7481418
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7481418
Spliceosome [BR:
pop03041
]
Complex A
U2 snRNP components
U2 related factors
7481418
Complex B
7481418
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
7481418
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Helicases
7481418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
T2SSE
AAA_7
Flavi_DEAD
FtsK_SpoIIIE
AAA_30
AAA_33
TsaE
AAA_29
PhoH
Motif
Other DBs
NCBI-GeneID:
7481418
NCBI-ProteinID:
XP_002301528
UniProt:
B9GSW3
LinkDB
All DBs
Position
2:complement(15523191..15527029)
Genome browser
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSLSAKIVKSNGAMGNNNNGGSSLINRWNGKPYSQRYYDILEK
RKNLPVWHQKEDFLQVLKKNQAIILVGETGSGKTTQIPQFVLEAVDLESPDKRRKMMIAC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLSTDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFGEAPLM
KVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHLCEPLGDILVFLTGEEEIEDACRKITK
EIGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLTI
DGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
NQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNLTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNHRALKAADNVRQQLVRIMAR
FNLKLCSTDFNSRDYYINIRKSILAGYFMQVAHLEQSGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIAPHYYDLQNFPQCEAKRVLEKLYRKRERE
KEENRNRK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagtttattcgacgtggttgacgagacgtcgctt
tctgcaaagatcgtgaaatcgaacggggcgatgggtaacaataacaatggaggaagtagt
ttgataaatcggtggaatgggaagccctactcacagaggtactatgatatattagagaag
aggaagaatttgcctgtttggcatcaaaaagaggatttcttacaagttttgaagaaaaat
caggctatcatccttgttggcgagactggtagtggtaaaaccactcagattcctcagttt
gttttggaagctgtagacttagaatctccggataaacgtaggaagatgatgattgcatgt
acccaacctcgaagggtggcggcaatgtctgtttctcgacgtgttgctgaggagatggat
gttacaattggcgaagaggttggttatagcatccgttttgaagactgtagcagtgcgaaa
acggttttgaagtatcttactgatggtatgcttttaagagaagcaatgaccgatccactt
ttggaacggtacaaagtaataattcttgatgaggcccacgaaagaactctatcaacagat
gtgctattcgggcttcttaaagaagtgctgaaaaataggcctgacctgaagctagttgta
atgagtgcaacacttgaggctgagaaatttcagggttattttggtgaagcaccgcttatg
aaagttcctggcaggcttcatccggttgaaattttctatacccaggaccctgagagggat
tacctcgaggcagcaattcgaacagttgtccagatacacttgtgtgaaccccttggagat
atacttgttttcctaactggggaggaggagatagaagatgcttgccgaaaaataacaaaa
gaaattggaaatttgggggaccaagtggggccagtgaaagtggtgcctctatattctacg
cttccaccagccatgcagcaaaaaatattcgaacctgctccacctccactgcaggagggt
ggcccttctggaaggaagattgtggtgtcaacaaacattgcagaaacttctttgactata
gatggtattgtttatgttatcgaccctggcttctcaaaacaaaaggtttataacccacga
gtgcgggttgaatctttgttagtttcccccatatcaaaggctagtgcccaccagagatca
ggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaaaagtttc
aaccaggatcttcagcctcagacctatccagagatattgcggtcaaaccttgcaaataca
gttctaacgttgaagaaattgggtattgatgatctggtgcactttgatttcatggatcct
cctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggagcattggat
gatgaggggaatttgacaaagcttggggagatcatgagtgaatttcccttggatcctcag
ctgtcaaagatgcttgttgtgagtccagaattcaactgttcgaatgaaattctttcaatt
tcagccatgctttcagtacccaattgctttgtccgccctagggaggcgcaaaaggctgct
gatgaagcaaaagcaaggtttgggcacattgatggggatcacctcacgctgttgaatgtg
tatcacgcatataagcaaaacaatgaggatccatcttggtgctatgaaaattttgtcaat
catagagcactgaaggctgctgacaatgtaagacaacaacttgtgcgtatcatggccagg
tttaacctcaagttatgcagcactgacttcaacagccgtgactactacatcaacataaga
aaatctattttagccggatactttatgcaggttgctcacctggaacaaagtggacactac
ttgacagtgaaagacaaccaagtggtgcacctgcatccttcaaattgtttggatcacaag
ccggagtgggtgatttacaatgaatatgtcttgaccagccggaattatataaggactgtg
ctagacattcgtggggaatggttggtagacatagcaccacattactatgacttgcaaaat
ttcccgcaatgtgaggccaagcgggttcttgaaaagctttacaggaagcgggagagggag
aaggaggagaacaggaacagaaaatga
DBGET
integrated database retrieval system
